View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4734_high_1 (Length: 784)
Name: NF4734_high_1
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4734_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 729; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 1 - 757
Target Start/End: Original strand, 42959928 - 42960684
Alignment:
| Q |
1 |
acagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatccgaatcgataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42959928 |
acagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatccgaatcgataa |
42960027 |
T |
|
| Q |
101 |
ccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacatgctttggtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960028 |
ccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacatgctttggtat |
42960127 |
T |
|
| Q |
201 |
aaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactggacaactttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960128 |
aaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactggacaactttt |
42960227 |
T |
|
| Q |
301 |
gttgctaaccggattccttcgacacagcgatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatccacatttgtgttgatca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960228 |
gttgctaaccggattccttcgacacagcgatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatccacatttgtgttgatca |
42960327 |
T |
|
| Q |
401 |
atttgagatcacctgttgaccatggattagcaacttttgataagatgaatcctcccttaaatgcttcaattggaatgtcttttttgttcttcacaaaagc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960328 |
atttgagatcacctgttgaccatggattagcaacttttgataagatgaatcctcccttaaatgcttcaattggaatgtcttttttgttcttcacaaaagc |
42960427 |
T |
|
| Q |
501 |
tttaatggattctgctgatctttgtttaggtgggattgttgagagctgcccaatctggtttatcatgaaaggaaaaatcacttctatgcatgttacttgt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
42960428 |
tttaatggattctgctgatctttgtttaggtgggattgttgagagctgcccaatctggtttatcatgaaatgaaaaattacttctatgcatattacttgt |
42960527 |
T |
|
| Q |
601 |
tagtttctattttactattcaatgctcgtatagacattgcacgccttgttgattgtgctcggtaaatggttaatgacttccagcatcgcggttaattgtg |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42960528 |
tagtttctattttactattcaatgctcgtatagacgttgcacgccttgttgattgtgctcggtaaatggttaatgacttccagcatcgtggttaattgtg |
42960627 |
T |
|
| Q |
701 |
ttcggtgaatggttaaagagttgcgacatcttgtaatattcattaattaaccatata |
757 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960628 |
ttcggtaaatggttaatgagttgcgacatcttgtaatattcattaattaaccatata |
42960684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 5504807 - 5504339
Alignment:
| Q |
1 |
acagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatccgaatcgataa |
100 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| ||||| ||||| ||||| | ||| || ||||||| ||| |||||||||||| ||| | | | |
|
|
| T |
5504807 |
acagtggcttgaggatttgttcctggtgattcagtaaacgttgaaccatcgacgactcggagtctgtcaacgtcaagaaccttataatcagggctaacta |
5504708 |
T |
|
| Q |
101 |
ccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacatgctttggtat |
200 |
Q |
| |
|
|||| || ||||| ||||||||||| || |||||||| ||||| ||||||||| | || ||||| ||||| || ||| |||||| |||| |||||||| |
|
|
| T |
5504707 |
cctttcccacatgacatccaccatggtaatgccaaattgtgatgacagtgtctttgcagaactgctctagggaagatgtgtcattggcatgttttggtat |
5504608 |
T |
|
| Q |
201 |
aaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactggacaactttt |
300 |
Q |
| |
|
| ||||| | ||| ||||||| | |||||||||| |||| |||| | ||| ||| || ||| ||||||||||| | ||||||||| ||||| |
|
|
| T |
5504607 |
gaagttgacagtagtcttcacactaaggttaagaagtctctctgcggtttctcttttacataatgtgtagtttgtgaagtgttctgactggactacttta |
5504508 |
T |
|
| Q |
301 |
gttgctaaccggattccttcgacacagcgatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatccacatttgtgttgatca |
400 |
Q |
| |
|
| || | | ||| |||||||| ||||| | | |||||| || ||||||||||||||||||||||||||||| || |||| |||||| ||||||| || |
|
|
| T |
5504507 |
atggccatgctgatcccttcgacgcagcgctttaaatcgtatggatgactgaagtagttgaaggtaacagcaggattttcattcacattggtgttgacca |
5504408 |
T |
|
| Q |
401 |
atttgagatcacctgttgaccatggattagcaacttttgataagatgaatcctcccttaaatgcttcaa |
469 |
Q |
| |
|
| ||||| |||||| |||||| | | | ||||||| || |||| || |||||||| |||||||||| |
|
|
| T |
5504407 |
acttgagctcacctactgaccaagcactgccaactttggacaagacaaagcctcccttgaatgcttcaa |
5504339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 3094314 - 3094265
Alignment:
| Q |
118 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
167 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
3094314 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
3094265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 747
Target Start/End: Complemental strand, 8309561 - 8309504
Alignment:
| Q |
688 |
gcggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaat |
747 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||||||| |
|
|
| T |
8309561 |
gcggttaattgtgctcggtgaatggttagtgagttgcgatatcttgt--tattcattaat |
8309504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 3085468 - 3085419
Alignment:
| Q |
118 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
167 |
Q |
| |
|
||||||||||| ||||| || || |||||||||||||||||||| ||||| |
|
|
| T |
3085468 |
ccaccatgataatgccatattgtcatcacagtgtctctacaaaattgttc |
3085419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 690 - 746
Target Start/End: Original strand, 29246407 - 29246463
Alignment:
| Q |
690 |
ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaa |
746 |
Q |
| |
|
|||||||| ||||| ||| |||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
29246407 |
ggttaattatgttcagtgtatggttaatgagttgcgacaccttgttatattcattaa |
29246463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 747
Target Start/End: Original strand, 40829662 - 40829719
Alignment:
| Q |
690 |
ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaat |
747 |
Q |
| |
|
||||||||||| || ||| |||||||| ||||||| ||| ||||| |||||||||||| |
|
|
| T |
40829662 |
ggttaattgtgctcagtggatggttaatgagttgctacaccttgttatattcattaat |
40829719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University