View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4734_high_10 (Length: 266)

Name: NF4734_high_10
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4734_high_10
NF4734_high_10
[»] chr2 (3 HSPs)
chr2 (1-249)||(32785621-32785868)
chr2 (28-237)||(1037536-1037748)
chr2 (28-92)||(44575471-44575535)
[»] chr8 (8 HSPs)
chr8 (28-237)||(18315145-18315357)
chr8 (30-124)||(32151429-32151523)
chr8 (155-237)||(27922523-27922605)
chr8 (152-237)||(17636400-17636485)
chr8 (180-237)||(17628041-17628098)
chr8 (174-228)||(34936184-34936238)
chr8 (180-237)||(32151316-32151373)
chr8 (157-237)||(21235573-21235653)
[»] chr4 (27 HSPs)
chr4 (28-223)||(1600448-1600646)
chr4 (28-237)||(55908600-55908812)
chr4 (28-228)||(8186963-8187166)
chr4 (154-237)||(1519143-1519226)
chr4 (28-237)||(1548298-1548508)
chr4 (157-237)||(553494-553574)
chr4 (154-237)||(8184031-8184114)
chr4 (28-84)||(12121329-12121385)
chr4 (65-130)||(1552676-1552741)
chr4 (170-237)||(659726-659791)
chr4 (28-84)||(1489233-1489289)
chr4 (154-237)||(532204-532287)
chr4 (28-121)||(7225755-7225851)
chr4 (153-223)||(12121457-12121527)
chr4 (28-236)||(1524358-1524569)
chr4 (178-223)||(12116600-12116645)
chr4 (155-227)||(1545798-1545870)
chr4 (155-223)||(7307889-7307957)
chr4 (42-120)||(558630-558711)
chr4 (154-237)||(1513408-1513491)
chr4 (154-237)||(55505109-55505192)
chr4 (154-204)||(1489362-1489412)
chr4 (171-237)||(1508021-1508087)
chr4 (154-204)||(1537768-1537818)
chr4 (48-89)||(532349-532390)
chr4 (28-84)||(1504983-1505039)
chr4 (157-237)||(1552771-1552851)
[»] scaffold0295 (1 HSPs)
scaffold0295 (28-235)||(496-706)
[»] chr5 (5 HSPs)
chr5 (170-237)||(41901552-41901619)
chr5 (28-237)||(32267490-32267699)
chr5 (155-237)||(41889556-41889638)
chr5 (170-237)||(37937902-37937969)
chr5 (170-237)||(38267573-38267640)
[»] chr6 (10 HSPs)
chr6 (154-234)||(6432179-6432259)
chr6 (28-140)||(7119269-7119381)
chr6 (28-140)||(7131747-7131859)
chr6 (170-223)||(28935078-28935131)
chr6 (154-237)||(6410021-6410104)
chr6 (180-237)||(6394879-6394936)
chr6 (157-237)||(12102281-12102361)
chr6 (170-237)||(6402875-6402942)
chr6 (180-237)||(6585264-6585321)
chr6 (177-237)||(7994206-7994266)
[»] chr3 (9 HSPs)
chr3 (30-132)||(514602-514707)
chr3 (172-237)||(27005791-27005856)
chr3 (154-235)||(51113782-51113863)
chr3 (154-237)||(51120894-51120977)
chr3 (173-237)||(33093947-33094011)
chr3 (30-124)||(1657375-1657472)
chr3 (172-238)||(37580839-37580905)
chr3 (172-237)||(36811046-36811111)
chr3 (172-237)||(37587573-37587638)
[»] chr1 (6 HSPs)
chr1 (170-237)||(19468516-19468583)
chr1 (28-121)||(9581199-9581295)
chr1 (28-121)||(9586767-9586863)
chr1 (155-237)||(52082596-52082678)
chr1 (171-238)||(9586653-9586720)
chr1 (171-237)||(9581084-9581152)
[»] chr7 (1 HSPs)
chr7 (159-237)||(18724358-18724440)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 32785621 - 32785868
Alignment:
Q  1 catcaggatgttttcttctannnnnnnccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaagatg 100  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785621 catcaggatgttttcttctatttttt-ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaagatg 32785719  T
Q  101 ttctaagattagacatttgaatttggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacat 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32785720 ttctaagattagacatttgaatttggaccacttttcaagaatcgagcaccgtcgaatgaactttaaagctcccaaactagaggtgttgaacttgtcacat 32785819  T
Q  201 acaagaattgatgatgaagcactttatgtgatctcaataagttttcatg 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785820 acaagaattgatgatgaagcactttatgtgatctcaataagttttcatg 32785868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 1037536 - 1037748
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 124  Q
    ||||||||||| | |||||||||||||  ||| |||||||||||||||||||||||||| || |||||   ||||||| |||| ||||||||||||||||    
T  1037536 ccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttttaaggagatgttgtaaggttagacatttgaattt 1037635  T
Q  125 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactt 224  Q
     ||| ||| ||||||| |  | |  | | |||| |||||||||  |||  || |||||||||| ||||||||||||||| |  ||||||||||| ||||     
T  1037636 agcctactattcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactc 1037735  T
Q  225 tatgtgatctcaa 237  Q
    ||| |||||||||    
T  1037736 tatatgatctcaa 1037748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 44575471 - 44575535
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattt 92  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||   ||||| ||||||| |||||    
T  44575471 ccaatttgcaattacttgatttgagcttttgctattacatatccatagaagatatttgtgaattt 44575535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 18315145 - 18315357
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaaga---tgttctaagattagacatttgaattt 124  Q
    ||||||||||  | |||||||||||||| ||| |||||||| |||||||||||||||||||| ||||| ||   |||||| |||||||||| ||||| ||    
T  18315145 ccaatttgcagttgcttgatttgagctactgcgataacatacctgaagaaggtatttgtcaagttttacgaagttgttctgagattagacagttgaactt 18315244  T
Q  125 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactt 224  Q
     || |    |||||||||  |||  | | ||||||||||||||  ||||||||| ||||||||||||||||||||||||| | ||||||||||||||||     
T  18315245 agctcgtgattcaagaatgaagctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactc 18315344  T
Q  225 tatgtgatctcaa 237  Q
    |||||||||||||    
T  18315345 tatgtgatctcaa 18315357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 32151523 - 32151429
Alignment:
Q  30 aatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaagatgttctaagattagacatttgaattt 124  Q
    ||||||||||| ||||||||||| | |||| ||||||||||||||||||| ||||||||| |||||||||| ||| ||||||| |||||||||||    
T  32151523 aatttgcaactgcttgatttgaggtgttgccataacatatctgaagaaggaatttgtcaagttttaagatgctctgagattaggcatttgaattt 32151429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 27922605 - 27922523
Alignment:
Q  155 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||||||||| ||  ||||||| | |||||||||||||||||| ||||||   |||||||||||||||||||| |||||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaa 27922523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 17636400 - 17636485
Alignment:
Q  152 tcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||||||||||| ||  ||||||| | |||||||||||||||||||| ||| || |||| ||||||||| | |||||||||||||    
T  17636400 tcgaatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaa 17636485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 17628041 - 17628098
Alignment:
Q  180 gaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||   |||||||||||    
T  17628041 gaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaa 17628098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 34936184 - 34936238
Alignment:
Q  174 aaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatg 228  Q
    ||||||||||||||| |||||||| |||||||| |||||||| || |||| ||||    
T  34936184 aaactagaggtgttggacttgtcatatacaagagttgatgataaaacactctatg 34936238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 32151373 - 32151316
Alignment:
Q  180 gaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||||||| |||||||||  ||||||  ||||||||||| |||| |||||||||||||    
T  32151373 gaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaa 32151316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 21235653 - 21235573
Alignment:
Q  157 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||||||| ||  ||||||||| |||||||||||||||||| ||||| || ||||| | |||| ||| ||| |||| ||||    
T  21235653 tgaactttgaagttcccaaactggaggtgttgaacttgtcatatacaggagttgataacgaagaactctatttgatttcaa 21235573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 1600646 - 1600448
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 124  Q
    ||||||||||||| ||||||||||||  ||||  |||||||||||||||||||||||||||| |||||   |||| |||||| |||||||||||||| ||    
T  1600646 ccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagattttctaaaattagacatttgaactt 1600547  T
Q  125 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcact 223  Q
     ||||| | ||||| |||  |||  |   ||||||||||| ||  ||  ||||| |||||||||||||||||| |||||||  |||| |||||||||||    
T  1600546 agcccagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaagggttgacgatgaagcact 1600448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 55908600 - 55908812
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 124  Q
    ||||||||||| | |||||||||||||  ||| |||||||||||||||||||||||||| || || ||   ||||||| |||| ||||||||||||||||    
T  55908600 ccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaattt 55908699  T
Q  125 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactt 224  Q
     ||| ||| ||||||| |  | |  | | |||| |||||||||  |||  || |||||||||| ||||||||||||||| |  ||||||||||| ||||     
T  55908700 agcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactc 55908799  T
Q  225 tatgtgatctcaa 237  Q
    ||| |||||||||    
T  55908800 tatatgatctcaa 55908812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 8186963 - 8187166
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaa---gatgttctaagattagacatttgaattt 124  Q
    ||||||||||  | |||||||||||  |||||||| |||||||||||||||||||||||||| |||| |   |||||| | |||||||  ||||||| ||    
T  8186963 ccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttgaactt 8187062  T
Q  125 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactt 224  Q
     ||| ||| | ||||| | | || | |  ||||||||||| ||  | ||||||| ||||||||||||||||||||||||||| |||||||| || |||||    
T  8187063 agcctactgtccaagagttgggctctccggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactt 8187162  T
Q  225 tatg 228  Q
    ||||    
T  8187163 tatg 8187166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 1519143 - 1519226
Alignment:
Q  154 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||||  |||||||  ||||||| |||||||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaa 1519226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 1548298 - 1548508
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaagatgttctaagattagacatttgaatttggc 127  Q
    ||||||||||||| ||||||||||   |||||  |  |||||| || |||||||||||| || |||||||||||| |||||||||||| ||||| || ||    
T  1548298 ccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaacttagc 1548397  T
Q  128 ccacttttcaagaatcgagc-accctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcacttta 226  Q
     |    || || | |  ||| ||  | || |||||||| ||  ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||  |    
T  1548398 tcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaa 1548497  T
Q  227 tgtgatctcaa 237  Q
    |||||||||||    
T  1548498 tgtgatctcaa 1548508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 553574 - 553494
Alignment:
Q  157 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||||||||||  || |||||| ||||||||||||||||||  ||||||| ||||||||||||||||| ||||||| ||||    
T  553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaa 553494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 8184031 - 8184114
Alignment:
Q  154 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||||||||| ||  ||| ||||||||||||||||||||||||||||||||| ||||||||  |||||| ||||  |||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaa 8184114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 12121329 - 12121385
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtattt 84  Q
    ||||||||||| | ||||||||||| | |||||||||||||||||||||||||||||    
T  12121329 ccaatttgcaattgcttgatttgagtttttgctataacatatctgaagaaggtattt 12121385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 1552676 - 1552741
Alignment:
Q  65 catatctgaagaaggtatttgtcaatttttaagatgttctaagattagacatttgaatttggccca 130  Q
    |||||| || |||||||||||| || |||||||||||| |||||||||||||||||| || |||||    
T  1552676 catatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacatttgaacttagccca 1552741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 659791 - 659726
Alignment:
Q  170 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||||||||||||||||||||||||||||||||||  || || ||||| |||  |||||||||||||    
T  659791 tcccaaactagaggtgttgaacttgtcacatacaagtgttaataatgaaacac--tatgtgatctcaa 659726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 1489233 - 1489289
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtattt 84  Q
    ||||||||||| | ||| ||||||  |||||||||||||||||||||||||||||||    
T  1489233 ccaatttgcaattgcttaatttgacttattgctataacatatctgaagaaggtattt 1489289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 532287 - 532204
Alignment:
Q  154 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||||||||| ||   ||||| ||||||||||||||||||||| ||||||  ||||||||||||   |||||||||| |||||    
T  532287 gaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaaagctttatgtgacctcaa 532204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 7225755 - 7225851
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaa 121  Q
    |||||||| | || ||||||||||||| || | ||||||| | |||||||||  |||||||| |||||   ||||||| ||||||||||||||||||    
T  7225755 ccaatttggagctgcttgatttgagctcttcccataacatgtatgaagaaggggtttgtcaagttttacggagatgttgtaagattagacatttgaa 7225851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 12121457 - 12121527
Alignment:
Q  153 cgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcact 223  Q
    |||||||||||| ||  |||||||||||| ||||||||||||||| ||||||   ||||||||||| ||||    
T  12121457 cgaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacact 12121527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 236
Target Start/End: Original strand, 1524358 - 1524569
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag---atgttctaagattagacatttgaattt 124  Q
    |||||||||| || |||||||| || |||||||   || |||||||||||||||||  |||  |||||||   ||||| |||  |||| |||||||| ||    
T  1524358 ccaatttgcagctgcttgatttaagttattgctcatacgtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaactt 1524457  T
Q  125 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactt 224  Q
     ||| ||| ||| | ||| || |  | | ||||||||||| ||  ||||||  | ||||||||||| ||||||| ||||||  ||||||||||| ||||     
T  1524458 agccaactgttctaaaatagaacttcatggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactc 1524557  T
Q  225 tatgtgatctca 236  Q
    ||| ||||||||    
T  1524558 tatatgatctca 1524569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 12116600 - 12116645
Alignment:
Q  178 tagaggtgttgaacttgtcacatacaagaattgatgatgaagcact 223  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||    
T  12116600 tagaggtgttgaacttgtcacatacaagtgttgatgatgaatcact 12116645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 1545870 - 1545798
Alignment:
Q  155 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttat 227  Q
    |||||||||||||  ||| ||||| ||||||||||||||||    ||||||| ||||||||||| ||||||||    
T  1545870 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttat 1545798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 7307957 - 7307889
Alignment:
Q  155 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcact 223  Q
    |||||||||||||  ||||||| | ||||| |||||||||||| |||||  | ||||||||||||||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcact 7307889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 558711 - 558630
Alignment:
Q  42 cttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag---atgttctaagattagacatttga 120  Q
    |||||||||| ||||||  |||| ||||| ||| |||||||||||||  |||||||   ||||||||| |||||||||||||    
T  558711 cttgatttgatctattgtcataaaatatcagaaaaaggtatttgtcatgttttaaggacatgttctaacattagacatttga 558630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 1513408 - 1513491
Alignment:
Q  154 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||||||||| ||  |||||||||||| |||||||||||||||  |||||   ||||||||||| |||| || || |||||||    
T  1513408 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaa 1513491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 55505109 - 55505192
Alignment:
Q  154 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||||||||||| |   ||| ||||||||||||||||||||||| ||||||   |||| |||| | |||||||||||| |||||    
T  55505109 gaatgaactttagagtcccccaactagaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaa 55505192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 1489362 - 1489412
Alignment:
Q  154 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaa 204  Q
    ||||||||||| ||  |||||||||||| ||||||||||||||| ||||||    
T  1489362 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 1489412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 1508021 - 1508087
Alignment:
Q  171 cccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||||||||| |||||||||||||||||||| |   ||||||||||| |||| | ||| |||||||    
T  1508021 cccaaactagaagtgttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaa 1508087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 1537768 - 1537818
Alignment:
Q  154 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaa 204  Q
    ||||||||||| ||  |||||||||||| ||||||||||||||| ||||||    
T  1537768 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 1537818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 532390 - 532349
Alignment:
Q  48 ttgagctattgctataacatatctgaagaaggtatttgtcaa 89  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  532390 ttgagctattgttataacatatctaaagaaggtatttatcaa 532349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 1504983 - 1505039
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtattt 84  Q
    ||||||||||| |  || |||| || |||||| ||||||||||||||||||||||||    
T  1504983 ccaatttgcaattggttaattttagttattgccataacatatctgaagaaggtattt 1505039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 1552771 - 1552851
Alignment:
Q  157 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||||||| ||  ||||||||| || |||||||| |||||||||||||  ||| |||||||| ||||  ||||||| ||||    
T  1552771 tgaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaa 1552851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 235
Target Start/End: Original strand, 496 - 706
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 124  Q
    ||||||| ||| | |||||||||||||  ||| |||||||||||||||||||||||||| || || ||   ||||||| ||||  |||||||||||||||    
T  496 ccaatttacaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggctagacatttgaattt 595  T
Q  125 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactt 224  Q
     ||| ||| ||||||| |  | |  | | |||| |||||||||  |||  || |||||||||| |||||||||||||||||  | ||||||||| ||||     
T  596 agcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactc 695  T
Q  225 tatgtgatctc 235  Q
    ||| |||||||    
T  696 tatatgatctc 706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 41901552 - 41901619
Alignment:
Q  170 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||||||| |||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||    
T  41901552 tcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaa 41901619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 32267699 - 32267490
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag---atgttctaagattagacatttgaattt 124  Q
    |||||||||| || |||||||||||| |||| | |  ||||||||||||||||||   ||||||||||||   ||||| ||| |||||||||||||| ||    
T  32267699 ccaatttgcagctgcttgatttgagcaattgttgtcgcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacattagacatttgaactt 32267600  T
Q  125 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactt 224  Q
      |||| | ||||| | |   | | |    |||||||||| ||  ||||||| | ||||| |||||||||||||| |||| | |||||||||||||||||    
T  32267599 atcccagtgttcaacagt---gaaactagaaatgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactt 32267503  T
Q  225 tatgtgatctcaa 237  Q
    ||| |||||||||    
T  32267502 tatatgatctcaa 32267490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 41889556 - 41889638
Alignment:
Q  155 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||||||||||||  ||||||| | |||||||||||||| ||| |||||| | ||||||||||| ||||||||  ||||||||    
T  41889556 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaa 41889638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 37937969 - 37937902
Alignment:
Q  170 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||||| || ||||||||| ||||| |||||||||||||||||||| || |||| ||||| |||||||    
T  37937969 tcccaaccttgaggtgttggacttgacacatacaagaattgatgatcaaacactctatgtaatctcaa 37937902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 38267573 - 38267640
Alignment:
Q  170 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||||| || ||||||||| ||||| ||||||||||| ||||||||||  |||| ||||| |||||||    
T  38267573 tcccaaccttgaggtgttggacttgacacatacaagagttgatgatgacacactctatgtaatctcaa 38267640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 6432259 - 6432179
Alignment:
Q  154 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatct 234  Q
    ||||||||||| ||  |||||| ||  ||||||||||||||||| |||||||  ||||||||||| |||||||||||||||    
T  6432259 gaatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatct 6432179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 7119381 - 7119269
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag---atgttctaagattagacatttgaattt 124  Q
    ||||||| ||||| ||||||||||    |||| |||||||||||||||   ||||||||||| |||||||   |||||||||||||| ||||||||| ||    
T  7119381 ccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaacatttgaactt 7119285  T
Q  125 ggcccacttttcaaga 140  Q
     ||||||| |||||||    
T  7119284 agcccactgttcaaga 7119269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 7131859 - 7131747
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag---atgttctaagattagacatttgaattt 124  Q
    ||||||| ||||| ||||||||||    |||| |||||||||||||||   ||||||||||| |||||||   |||||||||||||| ||||||||| ||    
T  7131859 ccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaacatttgaactt 7131763  T
Q  125 ggcccacttttcaaga 140  Q
     ||||||| |||||||    
T  7131762 agcccactgttcaaga 7131747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 28935131 - 28935078
Alignment:
Q  170 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcact 223  Q
    |||| |||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  28935131 tccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcact 28935078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 6410104 - 6410021
Alignment:
Q  154 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||||||||| ||  |||||| ||  |||||||||||| |||| |||||||  ||||||||||| | ||||||||||||||||    
T  6410104 gaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaa 6410021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 6394936 - 6394879
Alignment:
Q  180 gaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||||||||||||||||| |||||||  ||||||||||| | |||| |||||||||||    
T  6394936 gaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaa 6394879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 12102361 - 12102281
Alignment:
Q  157 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||||||| ||  ||||||||| |||||||||||||||||||||||| || ||||| | |||| ||| ||| |||| ||||    
T  12102361 tgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttcaa 12102281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 6402942 - 6402875
Alignment:
Q  170 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||| ||||||| ||||||||||||||| |||| |   ||||||||||| |||| |||||||||||||    
T  6402942 tccccaactagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaa 6402875  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 6585264 - 6585321
Alignment:
Q  180 gaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||| |||||||||||| ||||||   ||||||||||| |||| |||||||||||||    
T  6585264 gaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaa 6585321  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 7994206 - 7994266
Alignment:
Q  177 ctagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||||||||||||| ||||| |||||||  || |||| ||| |||| |||||||||||||    
T  7994206 ctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaa 7994266  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 514602 - 514707
Alignment:
Q  30 aatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaatttgg 126  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||  || |||| |||||| |||||   ||||| ||||||||||| |||||||| || |    
T  514602 aatttgcagctaattgatttgagctattgtgataacatatctgacaaaagtatctgtcaagttttaaagagatggtctaagattaggcatttgaacttag 514701  T
Q  127 cccact 132  Q
    ||||||    
T  514702 cccact 514707  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 27005791 - 27005856
Alignment:
Q  172 ccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||||| ||||| ||||||||||||||||||||||||||| ||  | |||||||||| |||||||    
T  27005791 ccaaactggaggtcttgaacttgtcacatacaagaattgataatacaacactttatgtaatctcaa 27005856  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 51113782 - 51113863
Alignment:
Q  154 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctc 235  Q
    ||||||||||| || |||||||||| ||||||||  |||||||| ||||||   ||||||||||| |||| |||||||||||    
T  51113782 gaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctc 51113863  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 51120894 - 51120977
Alignment:
Q  154 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||||||||| ||  || |||| | ||||||||||||||||| ||||||||| |||||||||||  ||| ||||| |||||||    
T  51120894 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaa 51120977  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 33093947 - 33094011
Alignment:
Q  173 caaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||||||||||| |||||||||||| |  || || |||||||||||| |||||||| ||||||||    
T  33093947 caaactagaggttttgaacttgtcaaagtcatgagttgatgatgaagtactttatgcgatctcaa 33094011  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 1657472 - 1657375
Alignment:
Q  30 aatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 124  Q
    ||||| || ||||||||||||||| ||||| |  ||||||||||||||||||||  |||  |||||   | ||||| ||| |||||||||||||||||    
T  1657472 aatttacagctacttgatttgagccattgcaaagacatatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaattt 1657375  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 37580839 - 37580905
Alignment:
Q  172 ccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaat 238  Q
    ||||||| ||||| |||||||||||| |  |||||||||||||| ||| | | ||||||||||||||    
T  37580839 ccaaactcgaggtattgaacttgtcaaactcaagaattgatgataaagtattgtatgtgatctcaat 37580905  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 36811046 - 36811111
Alignment:
Q  172 ccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||||| ||||||||||||||||| ||| ||||||||||| ||  |||||| ||||  |||||||    
T  36811046 ccaaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgcaatctcaa 36811111  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 37587573 - 37587638
Alignment:
Q  172 ccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    ||||||| ||||| ||||||||||||||  |||||||||||||| ||| | | |||| ||||||||    
T  37587573 ccaaactggaggtattgaacttgtcacactcaagaattgatgataaagtattgtatgcgatctcaa 37587638  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 19468516 - 19468583
Alignment:
Q  170 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||||| || ||||||||||| |||||| ||||||   ||||||||||| ||||||||||||||||||    
T  19468516 tcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaa 19468583  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 9581295 - 9581199
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttt---aagatgttctaagattagacatttgaa 121  Q
    |||||||||| || |||||| || || |||||| |||||||||| ||  ||||||||||||| ||||   |||||||| | ||||||||||||||||    
T  9581295 ccaatttgcagctgcttgatctgcgccattgctgtaacatatctaaaagaggtatttgtcaagttttaaaaagatgttgtcagattagacatttgaa 9581199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 9586863 - 9586767
Alignment:
Q  28 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttt---aagatgttctaagattagacatttgaa 121  Q
    |||||||||| || |||||| || || |||||| |||||||||| ||  ||||||||||||| ||||   |||||||| | ||||||||||||||||    
T  9586863 ccaatttgcagctgcttgatctgtgccattgctgtaacatatctaaaagaggtatttgtcaagttttacaaagatgttgtcagattagacatttgaa 9586767  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 52082678 - 52082596
Alignment:
Q  155 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||||||||| ||  | ||||| | |||||||||||||||||| | |||| ||||||||||||| || | |||||||||||||    
T  52082678 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaa 52082596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 9586720 - 9586653
Alignment:
Q  171 cccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaat 238  Q
    ||||| ||||||||||||||||||||| |||||    || |||||||| |||||||||||| ||||||    
T  9586720 cccaagctagaggtgttgaacttgtcatatacagatgttaatgatgaaacactttatgtgacctcaat 9586653  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 9581152 - 9581084
Alignment:
Q  171 cccaaactagaggtgttgaacttgtcacatacaagaa--ttgatgatgaagcactttatgtgatctcaa 237  Q
    ||||| |||||||||||||||||||||  ||||| ||  || |||||||| | ||||||||||||||||    
T  9581152 cccaagctagaggtgttgaacttgtcatgtacaaaaaagttaatgatgaaacgctttatgtgatctcaa 9581084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 18724358 - 18724440
Alignment:
Q  159 aactttaaatctcccaaactagaggtgttg----aacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 237  Q
    |||||| || || |||||||||||||||||    |||||||||||  |||||||||||||| ||| ||| |||| ||||||||    
T  18724358 aactttgaagcttccaaactagaggtgttggttgaacttgtcacactcaagaattgatgataaagtactgtatgcgatctcaa 18724440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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