View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4734_high_15 (Length: 223)

Name: NF4734_high_15
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4734_high_15
NF4734_high_15
[»] chr4 (8 HSPs)
chr4 (19-197)||(52408277-52408455)
chr4 (31-197)||(52413515-52413681)
chr4 (144-193)||(51707480-51707529)
chr4 (148-196)||(51708195-51708243)
chr4 (145-196)||(13921835-13921886)
chr4 (145-194)||(13922561-13922610)
chr4 (148-196)||(2039383-2039431)
chr4 (137-197)||(24377200-24377260)
[»] chr6 (5 HSPs)
chr6 (73-197)||(13252761-13252885)
chr6 (150-196)||(6106920-6106966)
chr6 (145-196)||(15882152-15882203)
chr6 (145-196)||(10092445-10092496)
chr6 (145-193)||(6107699-6107747)
[»] chr3 (9 HSPs)
chr3 (73-194)||(7777340-7777460)
chr3 (35-157)||(7772051-7772172)
chr3 (146-197)||(2949040-2949091)
chr3 (148-196)||(10702885-10702933)
chr3 (151-197)||(19227463-19227509)
chr3 (145-197)||(52696076-52696129)
chr3 (145-188)||(33291832-33291875)
chr3 (145-188)||(46889487-46889530)
chr3 (145-194)||(33292451-33292500)
[»] scaffold1862 (1 HSPs)
scaffold1862 (107-197)||(1-91)
[»] chr1 (17 HSPs)
chr1 (69-177)||(12226462-12226571)
chr1 (144-197)||(1478553-1478606)
chr1 (144-197)||(1477956-1478009)
chr1 (144-193)||(1159078-1159127)
chr1 (144-197)||(35596938-35596991)
chr1 (144-197)||(35597536-35597589)
chr1 (149-196)||(42987166-42987213)
chr1 (144-197)||(23740511-23740564)
chr1 (148-196)||(23626076-23626124)
chr1 (142-193)||(48117878-48117928)
chr1 (145-194)||(34082900-34082949)
chr1 (148-197)||(23648084-23648135)
chr1 (150-196)||(23621665-23621711)
chr1 (148-195)||(23733402-23733451)
chr1 (148-197)||(23616743-23616794)
chr1 (144-196)||(23625849-23625901)
chr1 (144-196)||(23738418-23738470)
[»] chr2 (12 HSPs)
chr2 (145-195)||(12001083-12001133)
chr2 (145-196)||(42651296-42651347)
chr2 (116-166)||(38411100-38411150)
chr2 (144-189)||(3666868-3666913)
chr2 (144-197)||(3667448-3667501)
chr2 (145-197)||(38248088-38248140)
chr2 (144-196)||(39847132-39847184)
chr2 (145-196)||(19424184-19424235)
chr2 (145-194)||(18883873-18883922)
chr2 (152-197)||(19405329-19405374)
chr2 (145-197)||(4834775-4834827)
chr2 (145-181)||(38248931-38248967)
[»] chr7 (6 HSPs)
chr7 (144-197)||(47171404-47171457)
chr7 (134-197)||(40496390-40496453)
chr7 (144-197)||(9268897-9268950)
chr7 (136-197)||(9269928-9269989)
chr7 (145-194)||(38099236-38099285)
chr7 (150-196)||(33781601-33781647)
[»] chr8 (8 HSPs)
chr8 (144-196)||(3029259-3029311)
chr8 (144-197)||(3028670-3028723)
chr8 (145-197)||(44622262-44622314)
chr8 (134-193)||(19475152-19475211)
chr8 (134-193)||(19546077-19546136)
chr8 (134-193)||(19586560-19586619)
chr8 (160-197)||(10854028-10854065)
chr8 (151-193)||(44621612-44621654)
[»] scaffold0434 (1 HSPs)
scaffold0434 (145-197)||(12873-12925)
[»] chr5 (1 HSPs)
chr5 (145-183)||(16133579-16133617)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 52408455 - 52408277
Alignment:
Q  19 tttgcggcaaatggaaaggaacaaagtaacatcgaaagatgattttgcagagggaaaagtgtcacgtgagtttctaattgttatatttagcgagatatat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52408455 tttgcggcaaatggaaaggaacaaagtaacatcgaaagatgattttgcagagggaaaagtgtcacgtgagtttctaattgttatatttagcgagatatat 52408356  T
Q  119 gagctgtaggatttgtttaattaagcggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52408355 gagccgtaggatttgtttaattaagcggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 52408277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 31 - 197
Target Start/End: Original strand, 52413515 - 52413681
Alignment:
Q  31 ggaaaggaacaaagtaacatcgaaagatgattttgcagagggaaaagtgtcacgtgagtttctaattgttatatttagcgagatatatgagctgtaggat 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52413515 ggaaaggaacaaagtaacatcgaaagatgattttgcagagggaaaagtgtcacgtgagtttctaattgttatatttagcgagatatatgagccgtaggat 52413614  T
Q  131 ttgtttaattaagcggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52413615 ttgtttaattaagcggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 52413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 51707529 - 51707480
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaacggat 193  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||||||||||    
T  51707529 cggttcagatttggtgtaaatctttagacttacacctggtgtcaacggat 51707480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 51708195 - 51708243
Alignment:
Q  148 tgagatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||||||||    
T  51708195 tgagatttgatgtaagtcttttgacttacacatggtgtcaacggatcct 51708243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 13921886 - 13921835
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    ||||||||||||||||| ||| || |||||||| ||||||||||||||||||    
T  13921886 ggttgagatttggtgtatgtcattagacttacatctggtgtcaacggatcct 13921835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 13922561 - 13922610
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatc 194  Q
    ||||||||||||||||||||| || |||||| | ||||||||||||||||    
T  13922561 ggttgagatttggtgtaagtcattagacttagatctggtgtcaacggatc 13922610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 2039431 - 2039383
Alignment:
Q  148 tgagatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    ||||||||||||||||||||   ||||||| | ||||||||||||||||    
T  2039431 tgagatttggtgtaagtcttatcacttacagccggtgtcaacggatcct 2039383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 24377200 - 24377260
Alignment:
Q  137 aattaagcggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    |||||| ||| ||| ||| ||||||||||||| |||||| |  ||||||||||||||||||    
T  24377200 aattaaacggatgaaattcggtgtaagtctttagacttatatatggtgtcaacggatcctg 24377260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 13252761 - 13252885
Alignment:
Q  73 aaaagtgtcacgtgagtttctaattgttatatttagcgagatatatgagctgtaggatttgtttaattaagcggttgagatttggtgtaagtctttggac 172  Q
    ||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13252761 aaaagtgtcacgtgagtttctaattgttatatttagcaagacatgtgagccgtaggatttgtttaatttagcggttgagatttggtgtaagtctttggac 13252860  T
Q  173 ttacacctggtgtcaacggatcctg 197  Q
    ||||||||||||||  |||||||||    
T  13252861 ttacacctggtgtctgcggatcctg 13252885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 6106966 - 6106920
Alignment:
Q  150 agatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||    
T  6106966 agatttgatgtaagtcttttgacttacacctggtgtcaacggatcct 6106920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 15882203 - 15882152
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    ||||||||||||||||| ||| || ||||||||||||||||||| |||||||    
T  15882203 ggttgagatttggtgtatgtcattagacttacacctggtgtcaatggatcct 15882152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 10092445 - 10092496
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    ||||||||||| |||||||||||  |||||||| ||||||||||||| ||||    
T  10092445 ggttgagatttagtgtaagtcttatgacttacatctggtgtcaacgggtcct 10092496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 6107699 - 6107747
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggat 193  Q
    |||| |||||||  |||||||||| |||||||||||||||||| |||||    
T  6107699 ggttcagatttgacgtaagtcttttgacttacacctggtgtcagcggat 6107747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 7777340 - 7777460
Alignment:
Q  73 aaaagtgtcacgtgagtttctaattgttatatttagcgagatatatgagctgtaggatttgtttaattaagcggttgagatttggtgtaagtctttggac 172  Q
    ||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  7777340 aaaagtgtcacgtgagtttctaattgttatatttagcaagacatgtgagccgtaggatttgtttaatttagcggttgagatttggtgtaagtc-ttggac 7777438  T
Q  173 ttacacctggtgtcaacggatc 194  Q
    ||||||||||||||||||||||    
T  7777439 ttacacctggtgtcaacggatc 7777460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 7772172 - 7772051
Alignment:
Q  35 aggaacaaagtaacatcgaaagatgattttgcagagggaaaagtgtcacgtgagtttctaattgttatatttagcgagatatatgagctgtaggatttgt 134  Q
    ||||||||||||| |||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||    
T  7772172 aggaacaaagtaagatcgtaagatgattttgcag-ggaaaaagtgtcacgtgagtttctaattgttatatttagcaagacatgtgagccgtaggatttgt 7772074  T
Q  135 ttaattaagcggttgagatttgg 157  Q
    |||||||||||||||||||||||    
T  7772073 ttaattaagcggttgagatttgg 7772051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 2949091 - 2949040
Alignment:
Q  146 gttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  2949091 gttgagatttggtgtaagtcattagacttacacctggtgtcaacggatcctg 2949040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 10702933 - 10702885
Alignment:
Q  148 tgagatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    |||||||||||||||||| || || ||||||||||||||||||||||||    
T  10702933 tgagatttggtgtaagtcattagaattacacctggtgtcaacggatcct 10702885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 19227509 - 19227463
Alignment:
Q  151 gatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    |||||||||||||||||| |||||||| ||||||| |||||||||||    
T  19227509 gatttggtgtaagtcttttgacttacatctggtgtaaacggatcctg 19227463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 52696076 - 52696129
Alignment:
Q  145 ggttgagatttggtgtaagtctttg-gacttacacctggtgtcaacggatcctg 197  Q
    |||||||||||||||||||| |||  |||||||||||| |||||||||||||||    
T  52696076 ggttgagatttggtgtaagtttttttgacttacacctgttgtcaacggatcctg 52696129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 33291875 - 33291832
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaa 188  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||    
T  33291875 ggttgagatttggtgtaagttttttgacttacacctagtgtcaa 33291832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 46889530 - 46889487
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaa 188  Q
    ||||||||||| |||||||||||| |||||||| ||||||||||    
T  46889530 ggttgagattttgtgtaagtctttcgacttacatctggtgtcaa 46889487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 33292451 - 33292500
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatc 194  Q
    ||||||||||| |||||||||||| || ||| | ||||||||||||||||    
T  33292451 ggttgagatttagtgtaagtcttttgatttatatctggtgtcaacggatc 33292500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1862 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold1862
Description:

Target: scaffold1862; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 1 - 91
Alignment:
Q  107 agcgagatatatgagctgtaggatttgtttaattaagcggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1 agcgagatatatgagccgtaggatttgtttaattaagcggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 91  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 12226571 - 12226462
Alignment:
Q  69 agggaaaagtgtcacgtgag-tttctaattgttatatttagcgagatatatgagctgtaggatttgtttaattaagcggttgagatttggtgtaagtctt 167  Q
    |||||||||||||||| ||| ||||||||||||||||||||| |||||||| | |||| || ||||||||||||||| ||||||||||||||||||||||    
T  12226571 agggaaaagtgtcacgcgaggtttctaattgttatatttagcaagatatatcatctgtggggtttgtttaattaagccgttgagatttggtgtaagtctt 12226472  T
Q  168 tggacttaca 177  Q
    | ||||||||    
T  12226471 tagacttaca 12226462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 1478553 - 1478606
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1478553 cggttgagatttggtgtaagtcttttgacttacacctggtgtcaacggatcctg 1478606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 1478009 - 1477956
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1478009 cggttaagatttggtgtaagtcttttgacttacacctggtgtcaacggatcctg 1477956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 1159127 - 1159078
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaacggat 193  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  1159127 cggttgagatttggtgtaagtcttttgacttacacctgatgtcaacggat 1159078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 35596991 - 35596938
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    ||||||||||||||||||||||||| |||||||| | |||||||||||||||||    
T  35596991 cggttgagatttggtgtaagtcttttgacttacatccggtgtcaacggatcctg 35596938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 35597536 - 35597589
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  35597536 cggttaagatttggtgtaaatcttttgacttacacctggtgtcaacggatcctg 35597589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 42987213 - 42987166
Alignment:
Q  149 gagatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||    
T  42987213 gagatttggtgtaagtcatttgacttacacctggtgtcaacggatcct 42987166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 23740564 - 23740511
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    ||||| |||||| |||||||||||| |||||| |||||||||||||||||||||    
T  23740564 cggtttagatttagtgtaagtcttttgacttaaacctggtgtcaacggatcctg 23740511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 23626124 - 23626076
Alignment:
Q  148 tgagatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    ||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  23626124 tgagatttggtgtaaatgttttgacttacacctggtgtcaacggatcct 23626076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 48117878 - 48117928
Alignment:
Q  142 agcggttgagatttggtgtaagtctttggacttacacctggtgtcaacggat 193  Q
    ||||||||||||||||||||||||  | ||||||||||||||||||||||||    
T  48117878 agcggttgagatttggtgtaagtcaat-gacttacacctggtgtcaacggat 48117928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 34082900 - 34082949
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatc 194  Q
    ||||||||||||||||||||||   ||||||||||| |||||||||||||    
T  34082900 ggttgagatttggtgtaagtctaatgacttacacctagtgtcaacggatc 34082949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 23648135 - 23648084
Alignment:
Q  148 tgagatttggtgtaagtctttggacttacac--ctggtgtcaacggatcctg 197  Q
    ||||||||||||||| ||||| |||||||||  |||||||||||||||||||    
T  23648135 tgagatttggtgtaaatcttttgacttacacacctggtgtcaacggatcctg 23648084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 23621711 - 23621665
Alignment:
Q  150 agatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    ||||||| ||||||||||   ||||||||||||||||||||||||||    
T  23621711 agatttgttgtaagtcttcatacttacacctggtgtcaacggatcct 23621665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 23733451 - 23733402
Alignment:
Q  148 tgagatttggtgtaagtctttggactt--acacctggtgtcaacggatcc 195  Q
    ||||||||||||||| ||||| |||||  |||||||||||||||||||||    
T  23733451 tgagatttggtgtaaatcttttgacttacacacctggtgtcaacggatcc 23733402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 23616794 - 23616743
Alignment:
Q  148 tgagatttggtgtaagtctttggactt--acacctggtgtcaacggatcctg 197  Q
    ||||||||||||||| ||||| |||||  ||||||| |||||||||||||||    
T  23616794 tgagatttggtgtaaatcttttgacttacacacctgatgtcaacggatcctg 23616743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 23625901 - 23625849
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    ||||| |||||| |||||| ||||| ||| |||| ||||||||||||||||||    
T  23625901 cggtttagatttagtgtaaatcttttgacatacatctggtgtcaacggatcct 23625849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 23738470 - 23738418
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    |||||||||||| ||| |||| ||  |||||||||||||||||||| ||||||    
T  23738470 cggttgagatttagtggaagttttcagacttacacctggtgtcaacagatcct 23738418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 12001133 - 12001083
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcc 195  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12001133 ggttgagatttggtgtaagtcttttgacttacacctggtgtcaacggatcc 12001083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 42651296 - 42651347
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||||||||    
T  42651296 ggttgagatttggtgtaagtcttttgacttacacctgatatcaacggatcct 42651347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 38411150 - 38411100
Alignment:
Q  116 tatgagctgtaggatttgtttaattaagcggttgagatttggtgtaagtct 166  Q
    ||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  38411150 tatgagccgtaggatttgtttaatcaaacggttgagatttggtgtaagtct 38411100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 3666913 - 3666868
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaac 189  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  3666913 cggttaagatttggtgtaagtcttttgacttacacctggtgtcaac 3666868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 3667448 - 3667501
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    |||||||||||| | |||||||||| || |||||||||||||||||||||||||    
T  3667448 cggttgagatttagagtaagtcttttgatttacacctggtgtcaacggatcctg 3667501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 38248140 - 38248088
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    ||||||||||| ||||||||  || |||||||| |||||||||||||||||||    
T  38248140 ggttgagatttagtgtaagttattcgacttacatctggtgtcaacggatcctg 38248088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 39847184 - 39847132
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    ||||||||||||||| |||||| || ||||| ||||||||||||| |||||||    
T  39847184 cggttgagatttggtataagtcatttgacttgcacctggtgtcaatggatcct 39847132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 19424184 - 19424235
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    |||||| |||||||| ||| |||| | |||||||||||||||||||||||||    
T  19424184 ggttgaaatttggtgaaagccttttggcttacacctggtgtcaacggatcct 19424235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 18883873 - 18883922
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatc 194  Q
    ||||||||||||||| |||||    |||||||||||||||||||||||||    
T  18883873 ggttgagatttggtgcaagtcaaatgacttacacctggtgtcaacggatc 18883922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 19405374 - 19405329
Alignment:
Q  152 atttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    |||||||||||||||||  ||||||||||||||||||  |||||||    
T  19405374 atttggtgtaagtcttttaacttacacctggtgtcaatagatcctg 19405329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 4834775 - 4834827
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    |||||||||||||||||| |||   ||||||||| |||||||||| |||||||    
T  4834775 ggttgagatttggtgtaattctaatgacttacacatggtgtcaacagatcctg 4834827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 38248931 - 38248967
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctg 181  Q
    ||||||||||||||||||||| || ||||||||||||    
T  38248931 ggttgagatttggtgtaagtcattagacttacacctg 38248967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 47171404 - 47171457
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47171404 cggttaagatttggtgtaagtcttttgacttacacctggtgtcaacggatcctg 47171457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 40496390 - 40496453
Alignment:
Q  134 tttaattaagcggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    ||||||| | |||||  |||||||||||||||||| |||||||||||| |||||||||||||||    
T  40496390 tttaatttaacggttctgatttggtgtaagtcttttgacttacacctgatgtcaacggatcctg 40496453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 9268950 - 9268897
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    |||||||||||||||||||||  |  ||||||||||||||||||||||||||||    
T  9268950 cggttgagatttggtgtaagttatatgacttacacctggtgtcaacggatcctg 9268897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 9269928 - 9269989
Alignment:
Q  136 taattaagcggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    |||||||  |||||| ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  9269928 taattaaatggttgatatttgttgtaagtcttttgacttacacctggtgacaacggatcctg 9269989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 38099236 - 38099285
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatc 194  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  38099236 ggttgagatttggtgcaagtcttttgacttacacctggtatcaacggatc 38099285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 33781647 - 33781601
Alignment:
Q  150 agatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    |||||||||||||||| || |||||| ||||| ||||||||||||||    
T  33781647 agatttggtgtaagtcattagacttatacctgatgtcaacggatcct 33781601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 3029259 - 3029311
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcct 196  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  3029259 cggttgagatttggtgtaagtcttttgacttacatctggtgtcaacggatcct 3029311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 3028723 - 3028670
Alignment:
Q  144 cggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    ||||| ||||||||||||| |||||  |||||||||||||||||||||||||||    
T  3028723 cggttaagatttggtgtaactcttttaacttacacctggtgtcaacggatcctg 3028670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 44622262 - 44622314
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    |||| ||||||||||||||||||  |||||| |||||||||||||||||||||    
T  44622262 ggttaagatttggtgtaagtcttaagacttaaacctggtgtcaacggatcctg 44622314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 19475152 - 19475211
Alignment:
Q  134 tttaattaagcggttgagatttggtgtaagtctttggacttacacctggtgtcaacggat 193  Q
    ||||||| | ||| |||||||||||| ||||| || ||||||||||||||||||||||||    
T  19475152 tttaatttaacggctgagatttggtgcaagtcattagacttacacctggtgtcaacggat 19475211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 19546077 - 19546136
Alignment:
Q  134 tttaattaagcggttgagatttggtgtaagtctttggacttacacctggtgtcaacggat 193  Q
    ||||||| | ||| |||||||||||| ||||| || ||||||||||||||||||||||||    
T  19546077 tttaatttaacggctgagatttggtgcaagtcattagacttacacctggtgtcaacggat 19546136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 19586619 - 19586560
Alignment:
Q  134 tttaattaagcggttgagatttggtgtaagtctttggacttacacctggtgtcaacggat 193  Q
    ||||||| | ||| |||||||||||| ||||| || ||||||||||||||||||||||||    
T  19586619 tttaatttaacggctgagatttggtgcaagtcattagacttacacctggtgtcaacggat 19586560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 10854065 - 10854028
Alignment:
Q  160 taagtctttggacttacacctggtgtcaacggatcctg 197  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  10854065 taagtcttttgacttacacctggtgtcaacggatcctg 10854028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 44621654 - 44621612
Alignment:
Q  151 gatttggtgtaagtctttggacttacacctggtgtcaacggat 193  Q
    ||||||||| ||| |||| ||||||||||||||||||||||||    
T  44621654 gatttggtgcaagcctttagacttacacctggtgtcaacggat 44621612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 12925 - 12873
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggtgtcaacggatcctg 197  Q
    ||||||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  12925 ggttgagatttggtgtaagtcttttaacttacacatggtgtcaacggatcctg 12873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 16133617 - 16133579
Alignment:
Q  145 ggttgagatttggtgtaagtctttggacttacacctggt 183  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  16133617 ggttgagatttggtgtaagtctttacacttacacctggt 16133579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University