View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4734_high_7 (Length: 300)
Name: NF4734_high_7
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4734_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 38140315 - 38140581
Alignment:
| Q |
23 |
tgtgtgtgtcccttaatattaatataattagtttcgtttcaagttattaaacacatttcttattatttttaaacatctttaattaatacatatactacta |
122 |
Q |
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| T |
38140315 |
tgtgtgtgtcccttaatattaatataattagtttcgtttcaagttattaaacacatttcttattatttttaaacatctttaattaatacatatactacta |
38140414 |
T |
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| Q |
123 |
agtatttttagagatattgtcaaaaaataatctatttttgcttggaggttgttacggaatcggttacctgcaaggacaaacttggtggatcgtggtattc |
222 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38140415 |
agtatttttagagatattgtcaaaaaatattctatttttgtttggaggttgttacgaaatcggttacctacaaggacaaacttggtggatcgtggtattc |
38140514 |
T |
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| Q |
223 |
tttctgatgatgcggctggttgtttgacaggttacggtggtaccgagacttctcagcatttattcat |
289 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38140515 |
tttctgatgatgcggctggttgtttgacaggttgcggtggtaccgagacttctcagcatttattcat |
38140581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 289
Target Start/End: Original strand, 3913139 - 3913272
Alignment:
| Q |
156 |
atttttgcttggaggttgttacggaatcggttacctgcaaggacaaacttggtggatcgtggtattctttctgatgatgcggctggttgtttgacaggtt |
255 |
Q |
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| T |
3913139 |
atttttgcttggaggctgttatggaaccggttgcctaaaaggttgaacttggtggatcgtggtattattattgatgttgtggcaggttgcttgacaggat |
3913238 |
T |
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| Q |
256 |
acggtggtaccgagacttctcagcatttattcat |
289 |
Q |
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| T |
3913239 |
gcgacggtaccgagtcttctcagcatttattcat |
3913272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 156 - 289
Target Start/End: Complemental strand, 10362195 - 10362062
Alignment:
| Q |
156 |
atttttgcttggaggttgttacggaatcggttacctgcaaggacaaacttggtggatcgtggtattctttctgatgatgcggctggttgtttgacaggtt |
255 |
Q |
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|||||||||||||| |||||||||| ||||| ||| ||||||||||||| ||| |||||||||||| |||||||| ||||||||||||||| || ||| |
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| T |
10362195 |
atttttgcttggagactgttacggaaccggttgcctacaaggacaaactttgtgcatcgtggtattcattctgatgtcgcggctggttgtttgtcaagtt |
10362096 |
T |
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| Q |
256 |
acggtggtaccgagacttctcagcatttattcat |
289 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
10362095 |
gcggtgataccgagacttctcagcatttattcat |
10362062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 289
Target Start/End: Original strand, 26413065 - 26413198
Alignment:
| Q |
156 |
atttttgcttggaggttgttacggaatcggttacctgcaaggacaaacttggtggatcgtggtattctttctgatgatgcggctggttgtttgacaggtt |
255 |
Q |
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|||||||||||| || ||||||| || |||| | | ||||| | ||||||||||||| ||||||| ||| | ||| |||||| ||||| |||||||| | |
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| T |
26413065 |
atttttgcttgggggctgttacgaaactggttgcatacaaggtcgaacttggtggatcatggtattattttttatgctgcggccggttgcttgacaggat |
26413164 |
T |
|
| Q |
256 |
acggtggtaccgagacttctcagcatttattcat |
289 |
Q |
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||||| ||||||||||||||| ||||||||||| |
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| T |
26413165 |
gcggtgataccgagacttctcaacatttattcat |
26413198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 30616135 - 30616186
Alignment:
| Q |
193 |
caaggacaaacttggtggatcgtggtattctttctgatgatgcggctggttg |
244 |
Q |
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||||||||||||||||||||||||| ||| ||| ||||| ||||| |||||| |
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| T |
30616135 |
caaggacaaacttggtggatcgtggaattatttttgatgctgcggttggttg |
30616186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Original strand, 30616785 - 30616813
Alignment:
| Q |
258 |
ggtggtaccgagacttctcagcatttatt |
286 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
30616785 |
ggtggtaccgagacttctcagcatttatt |
30616813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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