View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4734_low_15 (Length: 228)

Name: NF4734_low_15
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4734_low_15
NF4734_low_15
[»] chr8 (2 HSPs)
chr8 (7-221)||(42843238-42843453)
chr8 (131-173)||(18737691-18737733)
[»] chr5 (1 HSPs)
chr5 (128-192)||(41015004-41015068)
[»] chr4 (3 HSPs)
chr4 (131-190)||(13458792-13458851)
chr4 (146-194)||(207485-207533)
chr4 (132-196)||(13298529-13298593)
[»] chr1 (4 HSPs)
chr1 (132-194)||(6025969-6026031)
chr1 (132-192)||(14643202-14643262)
chr1 (131-174)||(35488281-35488324)
chr1 (132-189)||(15956878-15956935)
[»] chr7 (2 HSPs)
chr7 (131-192)||(1110409-1110470)
chr7 (131-207)||(1109336-1109411)
[»] chr3 (5 HSPs)
chr3 (139-208)||(21754245-21754314)
chr3 (131-207)||(2990968-2991044)
chr3 (149-194)||(28802772-28802817)
chr3 (136-192)||(50402654-50402710)
chr3 (132-184)||(52681591-52681642)
[»] chr6 (5 HSPs)
chr6 (130-194)||(9163754-9163818)
chr6 (131-192)||(1912507-1912568)
chr6 (131-192)||(2732935-2732996)
chr6 (129-194)||(15724715-15724779)
chr6 (132-192)||(264555-264615)
[»] scaffold0491 (1 HSPs)
scaffold0491 (131-173)||(4390-4432)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 42843238 - 42843453
Alignment:
Q  7 gtttggaccaacttcaatcgcgtgat-agccgacacagaacaaagggaaatgtgtaaaatttcaaaattactacaagtagtaccaagtgctgtcaaagag 105  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42843238 gtttggacaaacttcaatcgcgtgattagccgacacagaacaaagggaaatgtgtaaaatttcaaaattactacaagtagtaccaagtgctgtcaaagag 42843337  T
Q  106 cggctatagcagagaagcagcaacaaaatttgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaatagtgacactatagca 205  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42843338 cggctatagcagagaagcaccaacaaaatttgaacaaattgctattgttccgggataagctattaagtataaattgttgtcaaatagtgacactatagca 42843437  T
Q  206 ctaaggtaccgtttga 221  Q
    ||||||||||||||||    
T  42843438 ctaaggtaccgtttga 42843453  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 18737691 - 18737733
Alignment:
Q  131 aaatttgaacaaattgccattgttccgggataagctatttagt 173  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||    
T  18737691 aaatttgaacaaattgctattgtttcgggatatgctatttagt 18737733  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 41015068 - 41015004
Alignment:
Q  128 acaaaatttgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaatag 192  Q
    |||||||||||||||| ||| ||||||||| |||| ||||||||||| ||| |||||||| ||||    
T  41015068 acaaaatttgaacaaactgctattgttccgtgatatgctatttagtacaaagtgttgtcatatag 41015004  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 13458851 - 13458792
Alignment:
Q  131 aaatttgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaat 190  Q
    ||||||||||||||  |||||||||||  ||| ||||||||||||||| |||||||||||    
T  13458851 aaatttgaacaaatcaccattgttccgtaatacgctatttagtataaagtgttgtcaaat 13458792  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 207485 - 207533
Alignment:
Q  146 gccattgttccgggataagctatttagtataaattgttgtcaaatagtg 194  Q
    |||||||||||| |||| ||||||||||| ||| | |||||||||||||    
T  207485 gccattgttccgcgatatgctatttagtacaaagtattgtcaaatagtg 207533  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 13298529 - 13298593
Alignment:
Q  132 aatttgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaatagtgac 196  Q
    |||||||||||||  | ||||||| | |||| ||||||||||| ||| || ||||||||||||||    
T  13298529 aatttgaacaaatcactattgttctgtgatatgctatttagtacaaagtgctgtcaaatagtgac 13298593  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 6026031 - 6025969
Alignment:
Q  132 aatttgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaatagtg 194  Q
    ||||||||||||| |  ||||||||| |||| ||||||||||| ||| |||||||||||||||    
T  6026031 aatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgttgtcaaatagtg 6025969  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 14643262 - 14643202
Alignment:
Q  132 aatttgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaatag 192  Q
    |||||||||||||||||||||||| | |||| ||||||||||| ||  |||| ||||||||    
T  14643262 aatttgaacaaattgccattgttcagcgatacgctatttagtagaagatgttttcaaatag 14643202  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 35488281 - 35488324
Alignment:
Q  131 aaatttgaacaaattgccattgttccgggataagctatttagta 174  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||    
T  35488281 aaatttgaacaaactgctattgttccgggatacgctatttagta 35488324  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 15956878 - 15956935
Alignment:
Q  132 aatttgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaa 189  Q
    |||||||||||||||  |||||||||  ||| ||||||||||| ||| ||||||||||    
T  15956878 aatttgaacaaattgttattgttccgccatacgctatttagtacaaagtgttgtcaaa 15956935  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 1110470 - 1110409
Alignment:
Q  131 aaatttgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaatag 192  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||   || |||||||||||||    
T  1110470 aaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgttgtcaaatag 1110409  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 1109411 - 1109336
Alignment:
Q  131 aaatttgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaatagtgacactatagcact 207  Q
    ||||||||||||||  ||||||||||| ||||  |||||||||| ||| ||||||||| ||||| | ||||||||||    
T  1109411 aaatttgaacaaatccccattgttccgcgatacactatttagtacaaaatgttgtcaagtagtg-ccctatagcact 1109336  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 21754245 - 21754314
Alignment:
Q  139 acaaattgccattgttccgggataagctatttagtataaattgttgtcaaatagtgacactatagcacta 208  Q
    |||||| || ||||||||| ||||  |||||||||| ||||||||||||||||| | | |||||||||||    
T  21754245 acaaatcgctattgttccgcgatacactatttagtacaaattgttgtcaaatagcggcgctatagcacta 21754314  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 2991044 - 2990968
Alignment:
Q  131 aaatttgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaatagtgacactatagcact 207  Q
    ||||||||||||||| |  |||||||  |||| ||||||||||| ||| ||||||||||||||| | ||||| ||||    
T  2991044 aaatttgaacaaatttcttttgttccacgatacgctatttagtacaaaatgttgtcaaatagtggccctatatcact 2990968  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 28802817 - 28802772
Alignment:
Q  149 attgttccgggataagctatttagtataaattgttgtcaaatagtg 194  Q
    ||||||||| |||| |||||||| |||||| |||||||||||||||    
T  28802817 attgttccgcgatatgctatttaatataaagtgttgtcaaatagtg 28802772  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 50402710 - 50402654
Alignment:
Q  136 tgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaatag 192  Q
    |||||||||  | |||||||||  ||| ||||||||||||||| |||||||||||||    
T  50402710 tgaacaaatcactattgttccgcaatatgctatttagtataaagtgttgtcaaatag 50402654  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 52681642 - 52681591
Alignment:
Q  132 aatttgaacaaattgccattgttccgggataagctatttagtataaattgttg 184  Q
    ||||||||||| | ||||||||| ||||||| ||||||||||||||| |||||    
T  52681642 aatttgaacaa-tagccattgtttcgggatacgctatttagtataaaatgttg 52681591  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 9163754 - 9163818
Alignment:
Q  130 aaaatttgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaatagtg 194  Q
    |||||||||||||||  | |||||||||  ||| ||||||||||| ||| |||||||||||||||    
T  9163754 aaaatttgaacaaatccctattgttccgttatacgctatttagtacaaaatgttgtcaaatagtg 9163818  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 1912568 - 1912507
Alignment:
Q  131 aaatttgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaatag 192  Q
    |||||||||||||| || ||||||| | ||||  |||||||||| ||||| |||||||||||    
T  1912568 aaatttgaacaaatcgctattgttctgcgatatactatttagtacaaattattgtcaaatag 1912507  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 2732935 - 2732996
Alignment:
Q  131 aaatttgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaatag 192  Q
    |||||||||||||| || ||||||  | |||| ||||||||||| ||| |||||||||||||    
T  2732935 aaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatag 2732996  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 15724779 - 15724715
Alignment:
Q  129 caaaatttgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaatagtg 194  Q
    ||||||||||||||||  | |||||||||  ||| ||||||| ||||||| |||||||||||||||    
T  15724779 caaaatttgaacaaatccctattgttccgt-atacgctatttggtataaaatgttgtcaaatagtg 15724715  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 264555 - 264615
Alignment:
Q  132 aatttgaacaaattgccattgttccgggataagctatttagtataaattgttgtcaaatag 192  Q
    |||||||||||||||  ||||||| | | || ||||||||||| ||| |||||||||||||    
T  264555 aatttgaacaaattgttattgttctgtggtaggctatttagtacaaagtgttgtcaaatag 264615  T

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Target: scaffold0491 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 4390 - 4432
Alignment:
Q  131 aaatttgaacaaattgccattgttccgggataagctatttagt 173  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||    
T  4390 aaatttgaacaaattgctattgtttcgggatatgctatttagt 4432  T

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