View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4734_low_2 (Length: 424)
Name: NF4734_low_2
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4734_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 406
Target Start/End: Complemental strand, 7563725 - 7563339
Alignment:
| Q |
20 |
aggagcatgcaatcgaacttgccaaagctatggaaaatgaggatggcgtaactggagctgtgaaagcattttttaagcagcttcctaaaaataaacctga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7563725 |
aggagcatgcaatcgaacttgccaaagctatggaaaatgaggatggcgtaactggagctgtgaaagaattttttaagcagcttcctaaaaataaacctga |
7563626 |
T |
|
| Q |
120 |
gcctaatacagagccatcttcatctagttgtttctcatatatagctagatgttttggttattcctgatccaatgcaagctggttagaccccaccatttct |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7563625 |
gcctaatacagagccatcttcatctagttgtttctcatatatagctagatgttttggttattcctgatccaatgcaagctggttagaccccaccatttct |
7563526 |
T |
|
| Q |
220 |
cgatccatatgtacatcccattaatatatgttactgcatgcttctatttccatgctcgacttgtcacactgttctgtcattgcaaatatcagtgcatgct |
319 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
7563525 |
cgatccatatgtacatcccatttatatatgttaatgcatgcttctatttccatgctcgacttgtcacactgttctgtgattacaaatatcagtgcatgct |
7563426 |
T |
|
| Q |
320 |
tctatttaactcgagcttcaatatgtgtgtaaattttctgttgtgtctgtaatcgattcccttggtacctgtgtaatggttttgttc |
406 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7563425 |
tctatttaacttgagcttcaatatgtgtgtaaattttctgttgtgtctgtaatcgattcccttggtacctgtgtaatggttttgttc |
7563339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 406
Target Start/End: Complemental strand, 7559968 - 7559583
Alignment:
| Q |
20 |
aggagcatgcaatcgaacttgccaaagctatggaaaatgaggatggcgtaactggagctgtgaaagcattttttaagcagcttcctaaaaataaacctga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7559968 |
aggagcatgcaatcgaacttgccaaagctatggaaaatgaggatggcgtaactggagctgtgaaagtattttttaagcagcttcctaaaaataaacctga |
7559869 |
T |
|
| Q |
120 |
gcctaatacagagccatcttcatctagttgtttctcatatatagctagatgttttggttattcctgatccaatgcaagctggttagaccccaccatttct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7559868 |
gcctaatacagagccatcttcatctagttgtttctcatatatagctagatgttttggctattcctgatccaatgcaagctg-ttagaccccaccatttct |
7559770 |
T |
|
| Q |
220 |
cgatccatatgtacatcccattaatatatgttactgcatgcttctatttccatgctcgacttgtcacactgttctgtcattgcaaatatcagtgcatgct |
319 |
Q |
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|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
7559769 |
cgatccatatgtacatcccatttatatatgttattgcatgcttctatttccatgctcgacttgtcacactgttctgtgattacaaatatcagtgcatgct |
7559670 |
T |
|
| Q |
320 |
tctatttaactcgagcttcaatatgtgtgtaaattttctgttgtgtctgtaatcgattcccttggtacctgtgtaatggttttgttc |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7559669 |
tctatttaactcgagcttcaatatgtgtgtaaattttctgttgtgtctgtaatcgattcccttggtacctgtgtaatggttttgttc |
7559583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 7542819 - 7542631
Alignment:
| Q |
20 |
aggagcatgcaatcgaacttgccaaagctatggaaaatgaggatggcgtaactggagctgtgaaagcattttttaagcagcttcctaaaaataaacctga |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||||| || |
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| T |
7542819 |
aggagcatgcaattgaacttgccaaagctatggaaaatgaggatggggtaactggggctgtgaaagcattttttaagcagcttcctcaaaagaaacccga |
7542720 |
T |
|
| Q |
120 |
gcctaatacagagccatcttcatctagttgtttctcatatatagctagatgttttggttattcctgatccaatgcaagctggttagacc |
208 |
Q |
| |
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| |||| |||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||||| |
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| T |
7542719 |
gactaacacagagccatctccatctagttgtttctcaaatatagctagatgttttggtcattcctgatccagtgcaagctggtcagacc |
7542631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 298 - 406
Target Start/End: Complemental strand, 7542573 - 7542466
Alignment:
| Q |
298 |
attgcaaatatcagtgcatgcttctatttaactcgagcttcaatatgtgtgtaaattttctgttgtgtctgtaatcgattcccttggtacctgtgtaatg |
397 |
Q |
| |
|
||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
7542573 |
attgcaaatttctgtgcatgcttctatataacttgagcttcaatatgtgtgtaaattttctgttgtgtctgtaattgattccctt-gtacctgtgtaatg |
7542475 |
T |
|
| Q |
398 |
gttttgttc |
406 |
Q |
| |
|
|||||||| |
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|
| T |
7542474 |
cttttgttc |
7542466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 406
Target Start/End: Original strand, 8991984 - 8992369
Alignment:
| Q |
20 |
aggagcatgcaatcgaacttgccaaagctatggaaaatgaggatggcgtaactggagctgtgaaagcattttttaagcagcttcctaaaaataaacctga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8991984 |
aggagcatgcaatcgaacttgccaaagctatggaaaatgaggatggcgtaactggagctgtgaaagtattttttaagcagcttcctaaaaataaacctga |
8992083 |
T |
|
| Q |
120 |
gcctaatacagagccatcttcatctagttgtttctcatatatagctagatgttttggttattcctgatccaatgcaagctggttagaccccaccatttct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8992084 |
gcctaatacagagccatcttcatctagttgtttctcatatatagctagatgttttggctattcctgatccaatgcaagctg-ttagaccccaccatttct |
8992182 |
T |
|
| Q |
220 |
cgatccatatgtacatcccattaatatatgttactgcatgcttctatttccatgctcgacttgtcacactgttctgtcattgcaaatatcagtgcatgct |
319 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
8992183 |
cgatccatatgtacatcccatttatatatgttattgcatgcttctatttccatgctcgacttgtcacactgttctgtgattacaaatatcagtgcatgct |
8992282 |
T |
|
| Q |
320 |
tctatttaactcgagcttcaatatgtgtgtaaattttctgttgtgtctgtaatcgattcccttggtacctgtgtaatggttttgttc |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8992283 |
tctatttaactcgagcttcaatatgtgtgtaaattttctgttgtgtctgtaatcgattcccttggtacctgtgtaatggttttgttc |
8992369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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