View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4734_low_4 (Length: 350)
Name: NF4734_low_4
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4734_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 7806165 - 7805825
Alignment:
| Q |
1 |
tataaataatgagtatgtgaatactttatctttaatctagactctgtttatcgttagaaaaactgaaattagtgcttagaaaaatgattcttattcatgc |
100 |
Q |
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| T |
7806165 |
tataaataatgagtatgtgaat------tctttaatctagcctctgtttatcgttagaaaaactgaaattagtgcttagaaatatgattcttattcatgc |
7806072 |
T |
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| Q |
101 |
aagagtcaggagatagttacaaaacggtataggcaagaggagataccgttttttcctgttttagcagtgggaagacaaatcacatgaaaatgcctatatg |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| |
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| T |
7806071 |
aagagtcaggagatagttacgaaacggtataggcaagaggagataccgttttttcctgttttagcagtgggaagacaaatcacatgaaaacgtcgatatg |
7805972 |
T |
|
| Q |
201 |
taacgccgttacagctgtgacacaacgttacggctgcgaccgccctttacagctacgaaaaaataacacaatttccagatctttgtcatcacctcctctt |
300 |
Q |
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| T |
7805971 |
taacgccgatacagctgtgacacaacgttacagctgcgaccgccctttacagctacgaaaaaataacacaatttccagatctttgtcatcacctcctctt |
7805872 |
T |
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| Q |
301 |
tatttacagctttgttactccttcaattcccgtatctgtgctcctcc |
347 |
Q |
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| T |
7805871 |
tatttacagctttgttactccttcaattcccgtatctgtcctcctcc |
7805825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 331
Target Start/End: Complemental strand, 37081131 - 37081026
Alignment:
| Q |
226 |
cgttacggctgcgaccgccctttacagctacgaaaaaataacacaatttccagatctttgtcatcacctcctctttatttacagctttgttactccttca |
325 |
Q |
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|||||| || ||||||| | ||| |||| |||||| | |||||| |||||||||||| |||||||| ||||||||||||| ||||| ||||||||||| |
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| T |
37081131 |
cgttacagccgcgaccgatcgttatagctgcgaaaacagaacacagtttccagatcttggtcatcacatcctctttatttatagcttcattactccttca |
37081032 |
T |
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| Q |
326 |
attccc |
331 |
Q |
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|||||| |
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| T |
37081031 |
attccc |
37081026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 37081218 - 37081123
Alignment:
| Q |
121 |
aaaacggtataggcaagaggagataccgttttttcctgttttag-cagtgggaagacaaatcacatgaaaatgcctatatgtaacgccgttacagc |
215 |
Q |
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|||||||||| ||||||||| | ||||||||| ||||||||| | ||||||||| ||||||||||||| ||| || |||||||||||||||| |
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| T |
37081218 |
aaaacggtatgggcaagaggcaaaaccgtttttgcctgttttaaacggtgggaagaaaaatcacatgaaatcgccgttacgtaacgccgttacagc |
37081123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 32953371 - 32953448
Alignment:
| Q |
247 |
ttacagctacgaaaaaataacacaa-tttccagatctttgtcatcacctcctctttatttacagctttgttactcctt |
323 |
Q |
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|||||||| | |||||| ||||||| |||||||||| | ||||||||||||| ||||||||||||| |||||||||| |
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| T |
32953371 |
ttacagctgcaaaaaaagaacacaaatttccagatcctagtcatcacctcctttttatttacagctccgttactcctt |
32953448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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