View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4734_low_6 (Length: 334)
Name: NF4734_low_6
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4734_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 5157784 - 5157480
Alignment:
| Q |
11 |
aatgagatgaagaaaaagtgatcaaatccatttgttgtctgaattttagtttggaaaagtgagctcagatatgtttataatataggaaaatgcgagggac |
110 |
Q |
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| T |
5157784 |
aatgaaatgaagaaaaagtgatcaaatccatttgttgtctgaattttagtttggaaaagtgagctcagatatgtttataatataggaaaatgcgagggac |
5157685 |
T |
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| Q |
111 |
attagatacagctcatgaagttggattgtagccttcatgaacctctaaatatccggctcttcttttctttatttgataattcgatgaacgtctgataact |
210 |
Q |
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| T |
5157684 |
attagatacagctcatgaagttggattgtagccttcatgaacctctaaatatccggctcttcttttctttatttgataattcgatgagcgtctgataact |
5157585 |
T |
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| Q |
211 |
tagtatttatcccatcatttaatttttccggaccctcttcttttgaaggctttcattttcgtaatcaaagttttgttcttgatctaaggagagaaacata |
310 |
Q |
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| T |
5157584 |
tagtatttatcccatcatttaatttttcaggaccctcttcttttgaaggctttcattttcgtaatcaaagttttgttcttgatctaaggagagaaacata |
5157485 |
T |
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| Q |
311 |
acagt |
315 |
Q |
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||||| |
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| T |
5157484 |
acagt |
5157480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 307
Target Start/End: Original strand, 28735586 - 28735620
Alignment:
| Q |
273 |
aatcaaagttttgttcttgatctaaggagagaaac |
307 |
Q |
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| T |
28735586 |
aatcaaagctttgttcttgatctaaggagagaaac |
28735620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 29684784 - 29684744
Alignment:
| Q |
266 |
ttttcgtaatcaaagttttgttcttgatctaaggagagaaa |
306 |
Q |
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| T |
29684784 |
ttttcataatcaaagttttgttcttgatctaatgagggaaa |
29684744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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