View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4734_low_7 (Length: 300)
Name: NF4734_low_7
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4734_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 43961608 - 43961323
Alignment:
| Q |
1 |
gtaataaaaattggaaaaatatcaaaggcaagaaatatacatcatcctgctgaaagaagtttcttgatgagaaaaaataataccttccaaggaagataaa |
100 |
Q |
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| T |
43961608 |
gtaataaaaattggaaaaatatcaaaggcaagaaatatacatcatcctgctgaaagaagtttcttgatgagaaaaaataataccttccaaggaagataaa |
43961509 |
T |
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| Q |
101 |
tgaaattatccatagaattaagctgatccaattagcttccttgtgagcaacccatgcctaatgtgataaacaaccatatgtcagaaacaaaaatcgcaaa |
200 |
Q |
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| T |
43961508 |
tgaaattatccatagaattaagctgatccaattagcttccttgtgagcaacccatgcctaatgtgataaacaaccatatgtcagaaacaaaaatcacaaa |
43961409 |
T |
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| Q |
201 |
aatagtgaagaagattatagagagttaagtagttggttaacttacacttaaaatgataacgttgatataaaaatcagtcaaagttg |
286 |
Q |
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| T |
43961408 |
aatagtgaagaagattatagagagttaagtagttggttaacttacacttaaaatgataacgttgatataaaaatcagtcaaagttg |
43961323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 43954740 - 43954670
Alignment:
| Q |
74 |
aaaataataccttccaaggaagataaatgaaattatccatagaattaagctgatccaattagcttccttgt |
144 |
Q |
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|||| |||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||||||||| |
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| T |
43954740 |
aaaacaataccttccaaggccgataagtaaaattatccatagaatcgagctgatccaattagcttccttgt |
43954670 |
T |
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