View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4734_low_9 (Length: 297)
Name: NF4734_low_9
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4734_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 27908160 - 27908426
Alignment:
| Q |
14 |
gagatgaagaagaacaacaagatgcagatcttcgtcaaaactttgaccggaaagaccatcactctcgaggttgagagtagcgacaccatcgacaacgtca |
113 |
Q |
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| T |
27908160 |
gagaagaagaagaacaacaagatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtca |
27908259 |
T |
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| Q |
114 |
aggccaagatccaggttagttagggtttcttatgatcgctgattttgttacttttaattttgcttactcgatttattttaagggttttattaaaa-ttcg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27908260 |
aggccaagatccaggttagttagggtttcttatgatcgctgattttgttacttttaattttgcttactcgatttattttaagggttttattaaaatttcg |
27908359 |
T |
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| Q |
213 |
tgtctgctaggttttacaattgaaattatttgtgaaaattctactgataaaacaacaaagaaaaact |
279 |
Q |
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| T |
27908360 |
tgtctgctaggttttacaattgaaattatttgtgaaaattctactaataaaacaacaaagaaaaact |
27908426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 31306682 - 31306589
Alignment:
| Q |
33 |
agatgcagatcttcgtcaaaactttgaccggaaagaccatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatcca |
126 |
Q |
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| T |
31306682 |
agatgcagatctttgtgaaaacattgacaggaaaaaccatcactcttgaggtagagagttccgatacaattgataatgtcaaggccaagatcca |
31306589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 40493184 - 40493082
Alignment:
| Q |
32 |
aagatgcagatcttcgtcaaaactttgaccggaaagaccatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccaggtta |
131 |
Q |
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| T |
40493184 |
aagatgcagatcttcgtgaagactttgaccggaaagactatcaccctcgaggttgagagcagcgacacaatcgacaacgtcaaggccaagatccaggtta |
40493085 |
T |
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| Q |
132 |
gtt |
134 |
Q |
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||| |
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| T |
40493084 |
gtt |
40493082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 33772936 - 33773031
Alignment:
| Q |
33 |
agatgcagatcttcgtcaaaactttgaccggaaagaccatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccagg |
128 |
Q |
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| T |
33772936 |
agatgcaaatcttcgtgaaaaccctcactggaaagaccatcactctcgaggttgagagttccgacaccatcgacaacgttaaggctaagatccagg |
33773031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 33774972 - 33775065
Alignment:
| Q |
35 |
atgcagatcttcgtcaaaactttgaccggaaagaccatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccagg |
128 |
Q |
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| T |
33774972 |
atgcagatcttcgttaagaccctcaccggcaagaccaccacccttgaggtcgaaagctccgacaccatcgacaacgtcaaagccaagatccagg |
33775065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 36459855 - 36459952
Alignment:
| Q |
31 |
caagatgcagatcttcgtcaaaactttgaccggaaagaccatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccagg |
128 |
Q |
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| T |
36459855 |
caagatgcagatcttcgtgaaaaccctaacagggaagacgataaccctcgaggttgagtcttccgacacaatcgacaatgtcaaagccaagatccagg |
36459952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 42609768 - 42609683
Alignment:
| Q |
35 |
atgcagatcttcgtcaaaactttgaccggaaagaccatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaa |
120 |
Q |
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|||||||||||||| ||||| | ||||| || |||||||| |||||||||||||| || ||||| |||||||| ||||||||||| |
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| T |
42609768 |
atgcagatcttcgtgaaaaccctaaccgggaaaaccatcaccctcgaggttgagagcagtgacacaatcgacaatgtcaaggccaa |
42609683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 25948399 - 25948487
Alignment:
| Q |
35 |
atgcagatcttcgtcaaaactttgaccggaaagaccatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagat |
123 |
Q |
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| T |
25948399 |
atgcagatattcgtgaaaaccctaacagggaagacaattactctcgaagtcgagagtagtgacaccatcgacaatgtcaaagccaagat |
25948487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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