View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4735-Insertion-10 (Length: 148)

Name: NF4735-Insertion-10
Description: NF4735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4735-Insertion-10
NF4735-Insertion-10
[»] chr6 (3 HSPs)
chr6 (8-94)||(13094730-13094816)
chr6 (19-79)||(2820702-2820762)
chr6 (19-94)||(12691756-12691829)
[»] chr4 (3 HSPs)
chr4 (8-94)||(38714071-38714155)
chr4 (23-94)||(32324764-32324835)
chr4 (19-59)||(6510401-6510441)
[»] chr8 (2 HSPs)
chr8 (20-94)||(25721381-25721455)
chr8 (19-76)||(43799430-43799487)
[»] chr3 (3 HSPs)
chr3 (8-78)||(32516556-32516626)
chr3 (25-76)||(50878144-50878195)
chr3 (8-94)||(52343839-52343925)
[»] chr5 (3 HSPs)
chr5 (35-94)||(28569666-28569725)
chr5 (8-58)||(26103104-26103154)
chr5 (8-94)||(36419149-36419235)
[»] chr7 (2 HSPs)
chr7 (8-94)||(33999860-33999946)
chr7 (8-94)||(15954488-15954574)
[»] chr1 (2 HSPs)
chr1 (8-94)||(750077-750163)
chr1 (31-94)||(16587810-16587871)
[»] chr2 (1 HSPs)
chr2 (8-94)||(16255813-16255899)


Alignment Details
Target: chr6 (Bit Score: 59; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 13094816 - 13094730
Alignment:
Q  8 gtattttggtaggttggtttactttttgcatgtcttatgcatggtaaattaatcttgtctataatatatatctcattttaatttgtt 94  Q
    |||||||||||||||||||||| ||||||||||||| | |||| |||||||| ||||| ||||||||||||||||||||| ||||||    
T  13094816 gtattttggtaggttggtttaccttttgcatgtcttgttcatgataaattaaccttgtttataatatatatctcattttagtttgtt 13094730  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 2820762 - 2820702
Alignment:
Q  19 ggttggtttactttttgcatgtcttatgcatggtaaattaatcttgtctataatatatatc 79  Q
    ||||||||||| ||||||||||||| |||| |||||||| | ||||| |||||||||||||    
T  2820762 ggttggtttaccttttgcatgtcttgtgcaaggtaaattcaccttgtttataatatatatc 2820702  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 12691829 - 12691756
Alignment:
Q  19 ggttggtttactttttgcatgtcttatgcatggtaaattaatcttgtctataatatatatctcattttaatttgtt 94  Q
    ||||||||||| ||||||||||||| |||  ||||||| ||| |||| ||||  ||||||||||||||| ||||||    
T  12691829 ggttggtttaccttttgcatgtcttgtgcggggtaaatcaattttgtttata--atatatctcattttagtttgtt 12691756  T

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Target: chr4 (Bit Score: 56; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 38714155 - 38714071
Alignment:
Q  8 gtattttggtaggttggtttactttttgcatgtcttatgcatggtaaattaatcttgtctataatatatatctcattttaatttgtt 94  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||  ||||||||||||| ||||||    
T  38714155 gtatgttggtaggttggtttactttttgcatgtcttgtgcatggtaaattaactttgtctataat--atatctcattttagtttgtt 38714071  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 32324764 - 32324835
Alignment:
Q  23 ggtttactttttgcatgtcttatgcatggtaaattaatcttgtctataatatatatctcattttaatttgtt 94  Q
    ||||||| ||||||||||||| |||| |||||||   | ||||  |||||||||||||||||||| ||||||    
T  32324764 ggtttaccttttgcatgtcttgtgcacggtaaatcgttattgttcataatatatatctcattttagtttgtt 32324835  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 6510441 - 6510401
Alignment:
Q  19 ggttggtttactttttgcatgtcttatgcatggtaaattaa 59  Q
    ||||||||||| ||||||||||||| |||| ||||||||||    
T  6510441 ggttggtttaccttttgcatgtcttgtgcacggtaaattaa 6510401  T

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Target: chr8 (Bit Score: 43; Significance: 8e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 25721381 - 25721455
Alignment:
Q  20 gttggtttactttttgcatgtcttatgcatggtaaattaatcttgtctataatatatatctcattttaatttgtt 94  Q
    |||||||| | ||||||||||||| |||| |||||||||| ||||| ||||||||| ||||||||||| ||||||    
T  25721381 gttggtttgccttttgcatgtcttgtgcacggtaaattaaccttgtttataatataaatctcattttagtttgtt 25721455  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 43799487 - 43799430
Alignment:
Q  19 ggttggtttactttttgcatgtcttatgcatggtaaattaatcttgtctataatatat 76  Q
    |||||||||||  |||||||||||| |||| |||||||||||  ||| ||||||||||    
T  43799487 ggttggtttaccctttgcatgtcttgtgcagggtaaattaattgtgtttataatatat 43799430  T

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Target: chr3 (Bit Score: 43; Significance: 8e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 32516626 - 32516556
Alignment:
Q  8 gtattttggtaggttggtttactttttgcatgtcttatgcatggtaaattaatcttgtctataatatatat 78  Q
    ||||||||| |||||||||||| |||||||||||||||||| |  ||||||| ||||| ||||||||||||    
T  32516626 gtattttggcaggttggtttaccttttgcatgtcttatgcacgacaaattaaccttgtttataatatatat 32516556  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 50878195 - 50878144
Alignment:
Q  25 tttactttttgcatgtcttatgcatggtaaattaatcttgtctataatatat 76  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||    
T  50878195 tttaccttttgcatgtcttatgcacggtaaattaatcttgtttataatatat 50878144  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 52343925 - 52343839
Alignment:
Q  8 gtattttggtaggttggtttactttttgcatgtcttatgcatggtaaattaatcttgtctataatatatatctcattttaatttgtt 94  Q
    |||||||||| ||| ||||||| ||||||||||||| |||| ||||||| |   ||||  ||||||||| |||||||||| ||||||    
T  52343925 gtattttggttggtaggtttaccttttgcatgtcttgtgcacggtaaatcaccattgttcataatatatgtctcattttagtttgtt 52343839  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 28569725 - 28569666
Alignment:
Q  35 gcatgtcttatgcatggtaaattaatcttgtctataatatatatctcattttaatttgtt 94  Q
    ||||||||| |||| |||||||||| ||||| ||||||||||||||||||||| ||||||    
T  28569725 gcatgtcttgtgcacggtaaattaaccttgtttataatatatatctcattttagtttgtt 28569666  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 26103104 - 26103154
Alignment:
Q  8 gtattttggtaggttggtttactttttgcatgtcttatgcatggtaaatta 58  Q
    ||||||||||||||||| ||||  |||||||||||| |||| |||||||||    
T  26103104 gtattttggtaggttggcttaccctttgcatgtcttgtgcacggtaaatta 26103154  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 36419235 - 36419149
Alignment:
Q  8 gtattttggtaggttggtttactttttgcatgtcttatgcatggtaaattaatcttgtctataatatatatctcattttaatttgtt 94  Q
    |||||||| | ||| ||||||| ||||||||||||| |||| |||||||     |||| |||||||||| |||||||||| ||||||    
T  36419235 gtattttgattggtcggtttaccttttgcatgtcttgtgcacggtaaatcgccattgtttataatatatgtctcattttactttgtt 36419149  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 33999860 - 33999946
Alignment:
Q  8 gtattttggtaggttggtttactttttgcatgtcttatgcatggtaaattaatcttgtctataatatatatctcattttaatttgtt 94  Q
    |||| ||||| ||||||||||| ||||||||||||| |||| |||||||    |||||  |||||||| ||||||||||| ||||||    
T  33999860 gtatcttggttggttggtttaccttttgcatgtcttgtgcacggtaaatcgtccttgttcataatatacatctcattttagtttgtt 33999946  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 15954488 - 15954574
Alignment:
Q  8 gtattttggtaggttggtttactttttgcatgtcttatgcatggtaaattaatcttgtctataatatatatctcattttaatttgtt 94  Q
    |||||||||| ||| ||||||| ||||||||||||| | || |||||||     |||| |||||||||| |||||||||| ||||||    
T  15954488 gtattttggttggtcggtttaccttttgcatgtcttgtccacggtaaatcgccattgtttataatatatgtctcattttagtttgtt 15954574  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 750163 - 750077
Alignment:
Q  8 gtattttggtaggttggtttactttttgcatgtcttatgcatggtaaattaatcttgtctataatatatatctcattttaatttgtt 94  Q
    |||| ||||| ||||||||||| ||||||||||||| ||||||||||||     ||||  ||||||||||| |||||||| ||||||    
T  750163 gtatcttggttggttggtttaccttttgcatgtcttgtgcatggtaaatcgccattgttcataatatatatatcattttagtttgtt 750077  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 16587810 - 16587871
Alignment:
Q  31 ttttgcatgtcttatgcatggtaaattaatcttgtctataatatatatctcattttaatttgtt 94  Q
    ||||||||||||| |||| ||||||| ||| |||| ||||  ||||||||||||||| ||||||    
T  16587810 ttttgcatgtcttgtgcagggtaaatcaattttgtttata--atatatctcattttattttgtt 16587871  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 16255813 - 16255899
Alignment:
Q  8 gtattttggtaggttggtttactttttgcatgtcttatgcatggtaaattaatcttgtctataatatatatctcattttaatttgtt 94  Q
    |||| ||||| ||| ||||||| ||||||||||||| |||| |||||||     |||| |||||||||| |||||||||| ||||||    
T  16255813 gtatattggttggtcggtttaccttttgcatgtcttgtgcacggtaaatcgccattgtttataatatatgtctcattttagtttgtt 16255899  T

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