View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4735-Insertion-4 (Length: 838)
Name: NF4735-Insertion-4
Description: NF4735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4735-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 7 - 575
Target Start/End: Original strand, 35561260 - 35561829
Alignment:
| Q |
7 |
acataggttggaatagatcatcgtacatgatacaatagttgataatcatcgaaaatattatgaactaaagaaacacaaactaagtatttaaacatcaaac |
106 |
Q |
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| T |
35561260 |
acataagttggaatagatcatcgtacatgatacaatagttgataatcatcgaaaatattatgaactaaagaaacacaaactgagtatttaaacatcaaac |
35561359 |
T |
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| Q |
107 |
cttcaacnnnnnnnnnnn-gtattttacaatcaatatgacgtttgaaattagaaactgcaaatcttaacttcaaactagaatgaattctaagttaaaatt |
205 |
Q |
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| T |
35561360 |
cttcaacaaaaaaataaaagtattttacgatcaatataacgtttgaaattagaaactacaaatcttaacttcaaactagaatcaattctaagttaaaatt |
35561459 |
T |
|
| Q |
206 |
aaaatttaataaacattatttaagcatgttgaaggtaattttatgtgtctagaattatggttagttcgatgaaattatagtacataatactacgatttgc |
305 |
Q |
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| T |
35561460 |
aaattttaataaacattatttaagcatgttgaaggtaattttatgtgtctagaattatggttagttcgataaaattatagtacataatactacgatttgc |
35561559 |
T |
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| Q |
306 |
ttgaaactacaaagtgtagcatttgaaaatttacggtagctcgtcgtgattctttcaaactgatcatactgaatctaaacattcattagtatatcaattt |
405 |
Q |
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| T |
35561560 |
ttgaaactacaaagtgtagcatttgaaaaattacgatagctcgtcgtgattctttcaaactgatcatactgaatctaaacattcattagtatatcaattt |
35561659 |
T |
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| Q |
406 |
tgagtgaatagttgctacattatgtatgccaannnnnnnnnggttaaataagttttgcccccttatcttg-nnnnnnnnngttttgctctctataaaatt |
504 |
Q |
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| T |
35561660 |
tgagtgaatagttgctacattatgtatgcc-atttttttttggttaaataagttttgctcccttatcttgaaaaaaaaaagttttgctctctataaaatt |
35561758 |
T |
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| Q |
505 |
ttcaaactttgttttttagttcctctaaaaaatttcaccaagttttagtccccaaatatttttcaccatca |
575 |
Q |
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| T |
35561759 |
ttcaaactttattttttagttcctctaaaaaatttcaccaagttttagtccccaaatatttttcaccatca |
35561829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 673 - 809
Target Start/End: Original strand, 35561926 - 35562064
Alignment:
| Q |
673 |
cacgtaatacaactttccttcttgatgaggtaccttaaagttttgataaacgagaaattgaaaccatcagactc--aacttttatttcatcactttctac |
770 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||| |||||||||||||||| |
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| T |
35561926 |
cacgtaatacaactttccttcttgatgaggtagcttaaagttttgataaacgagaaattgaaaccatctgactcaaaaattttgtttcatcactttctac |
35562025 |
T |
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| Q |
771 |
aacccatttttgaattgcttcaaaggagaatgaagcaac |
809 |
Q |
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| T |
35562026 |
aacccatttttgaattgcttcaaaggagaaagaagcaac |
35562064 |
T |
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Back To:
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