View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4735-Insertion-5 (Length: 268)

Name: NF4735-Insertion-5
Description: NF4735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4735-Insertion-5
NF4735-Insertion-5
[»] chr6 (3 HSPs)
chr6 (10-172)||(17188063-17188225)
chr6 (186-237)||(17190967-17191018)
chr6 (234-268)||(17191050-17191084)
[»] scaffold0042 (1 HSPs)
scaffold0042 (7-131)||(95775-95899)
[»] chr7 (3 HSPs)
chr7 (7-131)||(9791388-9791512)
chr7 (13-128)||(24553471-24553586)
chr7 (186-237)||(19203576-19203627)
[»] chr2 (2 HSPs)
chr2 (13-128)||(2129631-2129746)
chr2 (230-267)||(21294670-21294707)


Alignment Details
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 10 - 172
Target Start/End: Original strand, 17188063 - 17188225
Alignment:
Q  10 atgttcttcgcaagcctccacatgaaatttttatttttgtttggaatgggtgcccgccaaatctctttccacaccttatctctttgcagctttgaaggac 109  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||| || |||||||||    
T  17188063 atgttcttcgcaagcctccacatgaagtttttaattttgtttggaatgggtgctcgccaaatctctttccacaacttatctctttgccgccttgaaggac 17188162  T
Q  110 ccggttgaagtcttgctttctcaaatcaaaggagatgataggccgaacggacgaaatactcac 172  Q
    |||||||||||||||||||||||   ||||||||| |||||||||||||||| ||||||||||    
T  17188163 ccggttgaagtcttgctttctcatcacaaaggagacgataggccgaacggacaaaatactcac 17188225  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 17190967 - 17191018
Alignment:
Q  186 gctatattctaagaatttttcttcttctcatttctttgcaccgattagttta 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17190967 gctatattctaagaatttttcttcttctcatttctttgcaccgattagttta 17191018  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 17191050 - 17191084
Alignment:
Q  234 tttagtgtttgtttgattgaattacataggttgag 268  Q
    |||||||||||||||||||||||||||||||||||    
T  17191050 tttagtgtttgtttgattgaattacataggttgag 17191084  T

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Target: scaffold0042 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 95775 - 95899
Alignment:
Q  7 aggatgttcttcgcaagcctccacatgaaatttttatttttgtttggaatgggtgcccgccaaatctctttccacaccttatctctttgcagctttgaag 106  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||||||||| ||||||||||||| || ||||||    
T  95775 aggatgttctttgcaagcctccacatgaaatttttaattttgtttggaatgggtgcacgccagatttctttccacaacttatctctttgcggcgttgaag 95874  T
Q  107 gacccggttgaagtcttgctttctc 131  Q
    |||||||||||||||||||||||||    
T  95875 gacccggttgaagtcttgctttctc 95899  T

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Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 9791512 - 9791388
Alignment:
Q  7 aggatgttcttcgcaagcctccacatgaaatttttatttttgtttggaatgggtgcccgccaaatctctttccacaccttatctctttgcagctttgaag 106  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||| || |||||||||| ||||||||||||| || ||||||    
T  9791512 aggatgttctttgcaagcctccacataaaatttttaattttgtttggaatgggtgcacgccagatttctttccacaacttatctctttgcggcgttgaag 9791413  T
Q  107 gacccggttgaagtcttgctttctc 131  Q
    |||||||||||||||||||||||||    
T  9791412 gacccggttgaagtcttgctttctc 9791388  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 24553471 - 24553586
Alignment:
Q  13 ttcttcgcaagcctccacatgaaatttttatttttgtttggaatgggtgcccgccaaatctctttccacaccttatctctttgcagctttgaaggacccg 112  Q
    ||||| ||||||||||||||||| |||||  |||||||||| |||||||| |||||||| || |||||||  |||||||||||| | |||||||| ||||    
T  24553471 ttcttagcaagcctccacatgaagtttttgattttgtttgggatgggtgcacgccaaatttccttccacaatttatctctttgcgggtttgaaggtcccg 24553570  T
Q  113 gttgaagtcttgcttt 128  Q
    |||| |||||||||||    
T  24553571 gttggagtcttgcttt 24553586  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 19203627 - 19203576
Alignment:
Q  186 gctatattctaagaatttttcttcttctcatttctttgcaccgattagttta 237  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  19203627 gctatattctaagaatttttcttcgtctaatttctttgcaccgattagttta 19203576  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 2129631 - 2129746
Alignment:
Q  13 ttcttcgcaagcctccacatgaaatttttatttttgtttggaatgggtgcccgccaaatctctttccacaccttatctctttgcagctttgaaggacccg 112  Q
    ||||| |||||||||||||| || |||||  |||||||||| |||||||| |||||||| || |||||||  ||||| |||||| |  ||||||| ||||    
T  2129631 ttcttggcaagcctccacataaagttttttattttgtttgggatgggtgcacgccaaatttccttccacaatttatccctttgcggggttgaaggtcccg 2129730  T
Q  113 gttgaagtcttgcttt 128  Q
    |||| |||||||||||    
T  2129731 gttggagtcttgcttt 2129746  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 21294707 - 21294670
Alignment:
Q  230 ttagtttagtgtttgtttgattgaattacataggttga 267  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  21294707 ttagttttgtgtttatttgattgaattacataggttga 21294670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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