View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4735-Insertion-6 (Length: 729)

Name: NF4735-Insertion-6
Description: NF4735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4735-Insertion-6
NF4735-Insertion-6
[»] chr5 (19 HSPs)
chr5 (7-721)||(37385263-37385975)
chr5 (556-728)||(37232499-37232671)
chr5 (353-466)||(37217691-37217804)
chr5 (353-466)||(37223390-37223503)
chr5 (353-455)||(37232334-37232436)
chr5 (556-718)||(37217858-37218020)
chr5 (556-718)||(37223558-37223720)
chr5 (153-269)||(37217144-37217260)
chr5 (153-271)||(37232075-37232193)
chr5 (153-262)||(37223144-37223253)
chr5 (353-442)||(37198245-37198334)
chr5 (576-689)||(37203449-37203562)
chr5 (364-460)||(37203257-37203353)
chr5 (7-64)||(37216819-37216876)
chr5 (158-220)||(37197993-37198055)
chr5 (7-64)||(37231741-37231798)
chr5 (364-428)||(37315476-37315540)
chr5 (7-62)||(37222824-37222879)
chr5 (592-661)||(37315683-37315752)
[»] chr3 (2 HSPs)
chr3 (589-667)||(36199539-36199617)
chr3 (162-227)||(36197382-36197447)
[»] chr2 (1 HSPs)
chr2 (367-440)||(8733318-8733391)


Alignment Details
Target: chr5 (Bit Score: 608; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 7 - 721
Target Start/End: Complemental strand, 37385975 - 37385263
Alignment:
Q  7 actatggagagctgagagacaaggtttgttatcatagcattgttagtttgactttgcattgatcatttgaaagaaaagttgcatatgtaaggtttaaata 106  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37385975 actatggagagccgagaggcaaggtttgttatcatagcattgttagttttactttgcattgatcatttgaaagaaaagttgcatatgaaaggtttaaata 37385876  T
Q  107 ggaagatgataacctccatgtaactattttagacctatatatgttctcttcaattacgcagaaaactgcaataaaaaagatgaagatgcaagcaacaagg 206  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37385875 ggaagataataacctccatgtgactattttagacttatatatgttctcttcaattacacagaaaactgcaataaaaaagatgaagatgcaagcaacaagg 37385776  T
Q  207 gaatttcttgctgaactgaaaatcttaacaagagttcaccactgcaacctggtaaattttcaaacttaaatcatgttttgttttataaagttggttgttg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37385775 gaatttcttgctgaactgaaaatcttaacaagagttcaccactgcaacctggtaaattttcaaacttaaatcatgttttgttttataaagttggttgttg 37385676  T
Q  307 tgctgtaaacttatttgagtaatatgtgcttgtgtgtttgaacatgtataggtacacttgattggatattgtgttgagggatctctattccttgtttatg 406  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37385675 tgctgtaaacttatttgagtaatgtgtg--tgtgtgtttgaacatgtataggtacacttgattggatattgtgttgagggatctctattccttgtttatg 37385578  T
Q  407 aatacatcgaaaatggaaacttaagccaacatctacatgattcaggtgacataattataagaacaagatgaagagtatatattgtaagtgttgttgcatt 506  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |||| | ||||||||||||||    
T  37385577 aatacatcgacaatggaaacttaagccaaaatctacatgattcaggtgacataattataagtacatgatgaagagtatctattttcagtgttgttgcatt 37385478  T
Q  507 aatgtgaatacaatgactctagcctaaaaggatcaagtgaaactattgacagagagagagccgatgacgtggtctaccaggatgcaaattgctctggatg 606  Q
    |||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  37385477 aatgtgaataaaacgactctagcctaaaaggatcaagtgaaactatttacagagagaggaccgatgacgtggtctaccaggatgcaaattgctctggatg 37385378  T
Q  607 tagcaagaggccttgaataaattcatgagcattcagtgcctgtatacatccatcgcgacatcaaatcagataatattttattaaatgaaaacttcactgg 706  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37385377 tagcaagaggccttgaatacattcatgagcattcagtgcctgtatacatccatcgcgacatcaaatcagataatattttattaaatgaaaactttactgg 37385278  T
Q  707 gaaggtatagtatta 721  Q
    ||||||||| |||||    
T  37385277 gaaggtataatatta 37385263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 556 - 728
Target Start/End: Original strand, 37232499 - 37232671
Alignment:
Q  556 cagagagagagccgatgacgtggtctaccaggatgcaaattgctctggatgtagcaagaggccttgaataaattcatgagcattcagtgcctgtatacat 655  Q
    |||||| ||| | |||||| | |||||  |||||| ||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||| ||    
T  37232499 cagagaaagaactgatgaccttgtctagaaggatgaaaattgctctggatgtagcaagaggccttgagtatattcatgatcattcggtgcctgtatatat 37232598  T
Q  656 ccatcgcgacatcaaatcagataatattttattaaatgaaaacttcactgggaaggtatagtattacgcctct 728  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||||| |||||||||||| || || ||||||    
T  37232599 ccatcgtgacataaaatcagataatattttattaaataaaaacttcaatgggaaggtataatactatgcctct 37232671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 353 - 466
Target Start/End: Original strand, 37217691 - 37217804
Alignment:
Q  353 tataggtacacttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgaaaatggaaacttaagccaacatctacatgattcagg 452  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  37217691 tataggtacacttgattggatattgtgtcgagggatttctattccttgtgtatgaatacatggaaaatggaaacttaagccaacatctacataattcagg 37217790  T
Q  453 tgacataattataa 466  Q
    ||| || |||||||    
T  37217791 tgatattattataa 37217804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 353 - 466
Target Start/End: Original strand, 37223390 - 37223503
Alignment:
Q  353 tataggtacacttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgaaaatggaaacttaagccaacatctacatgattcagg 452  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| |||||||    
T  37223390 tataggtacacttgattggatattgtgttgagggatttctattccttgtgtatgaatacatggaaaatggaaacttaaaccaacatctacataattcagg 37223489  T
Q  453 tgacataattataa 466  Q
    ||| || |||||||    
T  37223490 tgatattattataa 37223503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 353 - 455
Target Start/End: Original strand, 37232334 - 37232436
Alignment:
Q  353 tataggtacacttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgaaaatggaaacttaagccaacatctacatgattcagg 452  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  37232334 tataggtacacttgattggatattgtgttgagggatttctatttcttgtgtatgaatacatggaaaatggaaacttaagccaacatctacataattcagg 37232433  T
Q  453 tga 455  Q
    |||    
T  37232434 tga 37232436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 556 - 718
Target Start/End: Original strand, 37217858 - 37218020
Alignment:
Q  556 cagagagagagccgatgacgtggtctaccaggatgcaaattgctctggatgtagcaagaggccttgaataaattcatgagcattcagtgcctgtatacat 655  Q
    |||||| ||| |||||||||| |||||| |||||| ||||||| |||||||| || || || || || || |||||||| ||||| || || ||||| ||    
T  37217858 cagagaaagaaccgatgacgttgtctacaaggatgaaaattgccctggatgttgcgaggggtctagagtatattcatgatcattccgttcccgtatatat 37217957  T
Q  656 ccatcgcgacatcaaatcagataatattttattaaatgaaaacttcactgggaaggtatagta 718  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  37217958 ccatcgcgacataaaatcagataatattttgttaaatgaaaacttcactggcaaggtatagta 37218020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 556 - 718
Target Start/End: Original strand, 37223558 - 37223720
Alignment:
Q  556 cagagagagagccgatgacgtggtctaccaggatgcaaattgctctggatgtagcaagaggccttgaataaattcatgagcattcagtgcctgtatacat 655  Q
    |||||| ||| ||||| |||| |||||| |||||| ||||||| |||||||| || ||||||||||| || |||||||| |||||  | |||||||| ||    
T  37223558 cagagaaagaaccgataacgttgtctacaaggatgaaaattgccctggatgttgcgagaggccttgagtatattcatgatcattccattcctgtatatat 37223657  T
Q  656 ccatcgcgacatcaaatcagataatattttattaaatgaaaacttcactgggaaggtatagta 718  Q
    |||||| ||||| ||||||||||||||| | |||||||||||||||||||| |||| ||||||    
T  37223658 ccatcgtgacataaaatcagataatattctgttaaatgaaaacttcactggcaaggcatagta 37223720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 153 - 269
Target Start/End: Original strand, 37217144 - 37217260
Alignment:
Q  153 tcttcaattacgcagaaaactgcaataaaaaagatgaagatgcaagcaacaagggaatttcttgctgaactgaaaatcttaacaagagttcaccactgca 252  Q
    |||| |||||| ||||||| |||||| || ||||||||||||||||||||||| ||||||||  ||||||||||| | |||||||| ||||| ||||| |    
T  37217144 tctttaattacacagaaaattgcaatcaagaagatgaagatgcaagcaacaagagaatttctctctgaactgaaagttttaacaagtgttcatcactgga 37217243  T
Q  253 acctggtaaattttcaa 269  Q
    |||||||||||||||||    
T  37217244 acctggtaaattttcaa 37217260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 153 - 271
Target Start/End: Original strand, 37232075 - 37232193
Alignment:
Q  153 tcttcaattacgcagaaaactgcaataaaaaagatgaagatgcaagcaacaagggaatttcttgctgaactgaaaatcttaacaagagttcaccactgca 252  Q
    |||| |||||| ||||||  |||||| || |||||||||| |||||||||||| ||||||||| ||||||||||| |||||||||| ||||  ||||  |    
T  37232075 tctttaattacacagaaagttgcaatcaagaagatgaagacgcaagcaacaagagaatttctttctgaactgaaagtcttaacaagtgttcgtcacttaa 37232174  T
Q  253 acctggtaaattttcaaac 271  Q
    |||||||||||||||||||    
T  37232175 acctggtaaattttcaaac 37232193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 37223144 - 37223253
Alignment:
Q  153 tcttcaattacgcagaaaactgcaataaaaaagatgaagatgcaagcaacaagggaatttcttgctgaactgaaaatcttaacaagagttcaccactgca 252  Q
    |||| |||||| ||||||| |||||| || ||||||||||||||||||||||| ||||||||| ||||||||||| | |||||||| ||||| ||| | |    
T  37223144 tctttaattacacagaaaattgcaatcaagaagatgaagatgcaagcaacaagagaatttctttctgaactgaaagtgttaacaagtgttcatcaccgga 37223243  T
Q  253 acctggtaaa 262  Q
    ||||||||||    
T  37223244 acctggtaaa 37223253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 353 - 442
Target Start/End: Original strand, 37198245 - 37198334
Alignment:
Q  353 tataggtacacttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgaaaatggaaacttaagccaacatctac 442  Q
    ||||||||| |||||| ||||| |||||||||||||| || |||||||| ||||||||||| || |||||||||||| ||||||||||||    
T  37198245 tataggtacgcttgatcggatactgtgttgagggatcccttttccttgtctatgaatacattgataatggaaacttaggccaacatctac 37198334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 576 - 689
Target Start/End: Original strand, 37203449 - 37203562
Alignment:
Q  576 tggtctaccaggatgcaaattgctctggatgtagcaagaggccttgaataaattcatgagcattcagtgcctgtatacatccatcgcgacatcaaatcag 675  Q
    |||||||| |||||||||||||| ||||||  ||| ||||| |||||||| |||||||| ||| |||| |||||||| ||||||||||| || || || |    
T  37203449 tggtctacaaggatgcaaattgcgctggattcagccagaggtcttgaatatattcatgaacatacagtacctgtatatatccatcgcgatataaagtcgg 37203548  T
Q  676 ataatattttatta 689  Q
    | || |||||||||    
T  37203549 agaacattttatta 37203562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 364 - 460
Target Start/End: Original strand, 37203257 - 37203353
Alignment:
Q  364 ttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgaaaatggaaacttaagccaacatctacatgattcaggtgacataa 460  Q
    |||||||||||||||||||| || | ||| |||||||| ||||||||||| || ||||||||||| || ||| |||| || ||||||||||| ||||    
T  37203257 ttgattggatattgtgttgaaggttttctcttccttgtctatgaatacattgacaatggaaacttgagtcaaaatcttcacgattcaggtgagataa 37203353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 37216819 - 37216876
Alignment:
Q  7 actatggagagctgagagacaaggtttgttatcatagcattgttagtttgactttgca 64  Q
    |||||||||||||||||| | |||||||| |||||||||||||||||||  |||||||    
T  37216819 actatggagagctgagaggccaggtttgtaatcatagcattgttagttttgctttgca 37216876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 37197993 - 37198055
Alignment:
Q  158 aattacgcagaaaactgcaataaaaaagatgaagatgcaagcaacaagggaatttcttgctga 220  Q
    |||||| |||||| ||||||||||||||||| | ||| |||||||||  ||||||||||||||    
T  37197993 aattacacagaaagctgcaataaaaaagatggacatgaaagcaacaaaagaatttcttgctga 37198055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 37231741 - 37231798
Alignment:
Q  7 actatggagagctgagagacaaggtttgttatcatagcattgttagtttgactttgca 64  Q
    ||||||||| |||| ||| ||||||||||||||||| | |||||||||| ||||||||    
T  37231741 actatggagtgctgggaggcaaggtttgttatcataactttgttagttttactttgca 37231798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 364 - 428
Target Start/End: Original strand, 37315476 - 37315540
Alignment:
Q  364 ttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgaaaatggaaactt 428  Q
    |||||||||||||| ||||| ||||| || |||||||| |||||| |||| || |||||||||||    
T  37315476 ttgattggatattgcgttgaaggatcacttttccttgtatatgaacacattgataatggaaactt 37315540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 37222824 - 37222879
Alignment:
Q  7 actatggagagctgagagacaaggtttgttatcatagcattgttagtttgactttg 62  Q
    ||||||||||| |||||| | |||||||| ||| ||||||||||||||| ||||||    
T  37222824 actatggagagttgagaggccaggtttgtaatcgtagcattgttagttttactttg 37222879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 661
Target Start/End: Original strand, 37315683 - 37315752
Alignment:
Q  592 aaattgctctggatgtagcaagaggccttgaataaattcatgagcattcagtgcctgtatacatccatcg 661  Q
    |||||||||| |||  |||||||||||||||||| |||||||| ||| | |||||| | || ||||||||    
T  37315683 aaattgctctagattcagcaagaggccttgaatacattcatgaacatactgtgcctatgtatatccatcg 37315752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 589 - 667
Target Start/End: Original strand, 36199539 - 36199617
Alignment:
Q  589 tgcaaattgctctggatgtagcaagaggccttgaataaattcatgagcattcagtgcctgtatacatccatcgcgacat 667  Q
    ||||||||||| |||||   || ||||| |||||||| || ||||||||| ||||||||||||| || ||||| |||||    
T  36199539 tgcaaattgctttggattctgccagaggtcttgaatatatccatgagcatacagtgcctgtatatattcatcgtgacat 36199617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 36197382 - 36197447
Alignment:
Q  162 acgcagaaaactgcaataaaaaagatgaagatgcaagcaacaagggaatttcttgctgaactgaaa 227  Q
    ||||||||| ||||||| || |||||| | ||||||||||| | ||||||||| |||||| |||||    
T  36197382 acgcagaaagctgcaatcaagaagatggatatgcaagcaacgaaggaatttctcgctgaattgaaa 36197447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 440
Target Start/End: Complemental strand, 8733391 - 8733318
Alignment:
Q  367 attggatattgtgttgagggatctctattccttgtttatgaatacatcgaaaatggaaacttaagccaacatct 440  Q
    |||||||||||||||||||| ||| ||||  | |||||||| ||||| || ||||| || ||||| ||||||||    
T  8733391 attggatattgtgttgagggctctttatttttggtttatgagtacattgagaatggcaatttaagtcaacatct 8733318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University