View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4735-Insertion-7 (Length: 464)

Name: NF4735-Insertion-7
Description: NF4735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4735-Insertion-7
NF4735-Insertion-7
[»] chr3 (14 HSPs)
chr3 (8-407)||(27629321-27629720)
chr3 (120-405)||(34521950-34522235)
chr3 (120-404)||(34487751-34488029)
chr3 (8-123)||(34488099-34488214)
chr3 (8-123)||(34522305-34522421)
chr3 (120-355)||(34468138-34468362)
chr3 (120-192)||(34509182-34509255)
chr3 (40-112)||(27623234-27623306)
chr3 (407-446)||(34521852-34521891)
chr3 (408-446)||(27629225-27629263)
chr3 (67-112)||(34509333-34509378)
chr3 (8-123)||(34468432-34468545)
chr3 (120-189)||(27623086-27623156)
chr3 (409-446)||(34487652-34487689)
[»] chr6 (1 HSPs)
chr6 (202-296)||(28762243-28762337)


Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 27629720 - 27629321
Alignment:
Q  8 tgaagttgaacaggatctaggacaaatggcatttcattcttaagagacgcatgtctcttctccacaaagtaaatcatcactgaggtttccccttctcctt 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27629720 tgaagttgaacagaatctaggacaaatggcatttcattcttaagagacgcatgtctcttctccacaaagtaaatcatcattgaggtttccccttctcctt 27629621  T
Q  108 ggaaagggcagctatgatgtaagttccactttcaataatttgtataattacttactgtttatccttttaattatacttattgctagtatttctactcttg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27629620 ggaaagggcagctatgatgtaagttccactttcaataatttgtataattacttactgtttatccttttaattatacttattgctagtatttctactcttg 27629521  T
Q  208 gttgcgtaggtaacaattactccagaagtgacttatagaggtgtgatctgtgctgttatggagcagcttgtgaggctgtatcatgattcatgcttgggaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  27629520 gttgcgtaggtaacaattactccagaagtgacttatagaggtgtgatctgtgctattatggagcagcttgtgaggctgtatcatgattcatacttgggaa 27629421  T
Q  308 agagacttcccaattatgatggccataagtgtatgtatactacaagcctgccccctccaaattaatggggcatatcactaaagcctctgaacctaacctt 407  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27629420 agagactttccaattatgatggccataagtgtatgtatactacaagcctgccccctccaaattaatggggcatatcactaaagcctctgaacctaacctt 27629321  T

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Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 120 - 405
Target Start/End: Complemental strand, 34522235 - 34521950
Alignment:
Q  120 tatgatgtaagttccactttcaataatttgtataattacttactgtttatccttttaattatacttattgctagtatttctactcttggttgcgtaggta 219  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34522235 tatgatgtaagttccactttcaatgatttgtataattacttactgtttatccttttaattatacttattgctagtatttctgctcttggttgcgtaggta 34522136  T
Q  220 acaattactccagaagtgacttatagaggtgtgatctgtgctgttatggagcagcttgtgaggctgtatcatgattcatgcttgggaaagagacttccca 319  Q
    |||||||||||||||| ||| | |||||||||||  |||| ||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||     
T  34522135 acaattactccagaagagacgtctagaggtgtgaattgtgttgttatggaacaacttctgaggctgtatcatgattcatacttgggaaagagacttccct 34522036  T
Q  320 attatgatggccataagtgtatgtatactacaagcctgccccctccaaattaatggggcatatcactaaagcctctgaacctaacc 405  Q
    |||||||||||||||||||| ||||||||||| ||| | |||||||||||| |||||||| |||||| |||||||| |||||||||    
T  34522035 attatgatggccataagtgtctgtatactacatgcccgtcccctccaaattgatggggcaaatcactgaagcctctaaacctaacc 34521950  T

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Target: chr3; HSP #3
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 120 - 404
Target Start/End: Complemental strand, 34488029 - 34487751
Alignment:
Q  120 tatgatgtaagttccactttcaataatttgtataattacttactgtttatccttttaattatacttattgctagtatttctactcttggttgcgtaggta 219  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  34488029 tatgatgtaagttccactttcaatgatttgtataattacttactgtttatccttttaattatacttattgctagtatttcttctcttggttgtgtaggta 34487930  T
Q  220 acaattactccagaagtgacttatagaggtgtgatctgtgctgttatggagcagcttgtgaggctgtatcatgattcatgcttgggaaagagacttccca 319  Q
    |||||||||||| ||| ||||| |||||||||||  ||||  ||||||||||||||| |||| ||||      |||||| |||||||||||||||||||     
T  34487929 acaattactccataagcgacttctagaggtgtgaattgtgtcgttatggagcagcttatgagactgt------attcatacttgggaaagagacttcccg 34487836  T
Q  320 attatgatggccataagtgtatgtatactacaagcctgccccctccaaattaatggggcatatcactaaagcctctgaacctaac 404  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||| || |||||    
T  34487835 attatgatggccataagtgtctgtatactacaaacctgccccctccaaattgatgggacatatcactaaagcttctaaagctaac 34487751  T

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Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 34488214 - 34488099
Alignment:
Q  8 tgaagttgaacaggatctaggacaaatggcatttcattcttaagagacgcatgtctcttctccacaaagtaaatcatcactgaggtttccccttctcctt 107  Q
    |||||||||| || |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| | || ||||||||||||||| |||    
T  34488214 tgaagttgaatagaatctaggacaaatgacatttcattcttaagagacgcatgcctcttctccacaacgtaaatctttaccgaggtttccccttcttctt 34488115  T
Q  108 ggaaagggcagctatg 123  Q
    ||||||||||||||||    
T  34488114 ggaaagggcagctatg 34488099  T

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Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 34522421 - 34522305
Alignment:
Q  8 tgaagttgaacaggatctaggacaaatggcatttcattcttaagagacgcatgtctcttctccacaaagtaaatcatcac-tgaggtttccccttctcct 106  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |  ||||||  ||||||||    
T  34522421 tgaagttgaacaagatctaggacaaatgacatttcattcttaagagacgcatgcctcttctccacaaagtaaatcatcactttgggtttcttcttctcct 34522322  T
Q  107 tggaaagggcagctatg 123  Q
    ||||||||| |||||||    
T  34522321 tggaaaggggagctatg 34522305  T

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Target: chr3; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 120 - 355
Target Start/End: Complemental strand, 34468362 - 34468138
Alignment:
Q  120 tatgatgtaagttccactttcaataatttgtataattacttactgtttatccttttaattatacttattgctagtatttctactcttggttgcgtaggta 219  Q
    |||||||||||||||||||| ||| |||||||||||||||     |||||||||||||||||||||| ||||            |||||| |||||||||    
T  34468362 tatgatgtaagttccactttgaatgatttgtataattactc----tttatccttttaattatacttactgct------------cttggtcgcgtaggta 34468279  T
Q  220 acaattactccagaagtgacttatagaggtgtgatctgtgctgttatggagcagcttgtgag------gctgtatcatgattcatgcttgggaaagagac 313  Q
    ||  |||||||||||| ||||| |||||||||||  |||||   |||||||||| |||||||      | ||||||||||||||| ||||||||||||||    
T  34468278 accgttactccagaagcgacttctagaggtgtgaattgtgcaagtatggagcagtttgtgagtagtaagttgtatcatgattcatacttgggaaagagac 34468179  T
Q  314 ttcccaattatgatggccataagtgtatgtatactacaagcc 355  Q
    ||||| ||||||||||| |||||||  | |||||||||||||    
T  34468178 ttccctattatgatggctataagtggct-tatactacaagcc 34468138  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 34509255 - 34509182
Alignment:
Q  120 tatgatgtaagttccactttcaataatttgta-taattacttactgtttatccttttaattatacttattgcta 192  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||| || ||||||| |||||||    
T  34509255 tatgatgtaagttccactttcaatgatttgtagtaatttcttactttttatccttatatttatactaattgcta 34509182  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 27623306 - 27623234
Alignment:
Q  40 ttcattcttaagagacgcatgtctcttctccacaaagtaaatcatcactgaggtttccccttctccttggaaa 112  Q
    |||||||||| | ||| |||| | || |||||||||||||||||||||| |||||||||||| ||||||||||    
T  27623306 ttcattcttaggggactcatgcccctcctccacaaagtaaatcatcactaaggtttccccttatccttggaaa 27623234  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 446
Target Start/End: Complemental strand, 34521891 - 34521852
Alignment:
Q  407 tgtcacacaaataaagggaaggaattgggctttagcacca 446  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34521891 tgtcacacaaataaagggaaggaattgggctttagcacca 34521852  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 408 - 446
Target Start/End: Complemental strand, 27629263 - 27629225
Alignment:
Q  408 gtcacacaaataaagggaaggaattgggctttagcacca 446  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27629263 gtcacacaaataaagggaaggaattgggctttagcacca 27629225  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 34509378 - 34509333
Alignment:
Q  67 ctccacaaagtaaatcatcactgaggtttccccttctccttggaaa 112  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||    
T  34509378 ctccacaaagtaaatcatcactaaggtttccccttctccctggaaa 34509333  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 34468545 - 34468432
Alignment:
Q  8 tgaagttgaacaggatctaggacaaatggcatttcattcttaagagacgcatgtctcttctccacaaagtaaatcatcactgaggtttccccttctcctt 107  Q
    |||||||||||||||||| ||||||||| |||||||||||   ||||| |||  | || ||||||||||||||||||| | || ||||||| ||| |       
T  34468545 tgaagttgaacaggatctgggacaaatgacatttcattct--ggagactcattcccctcctccacaaagtaaatcatcgccgacgtttccctttcgctcc 34468448  T
Q  108 ggaaagggcagctatg 123  Q
    |||||||| |||||||    
T  34468447 ggaaaggggagctatg 34468432  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 27623156 - 27623086
Alignment:
Q  120 tatgatgtaagttccactttcaataatttgta-taattacttactgtttatccttttaattatacttattg 189  Q
    |||||||||||||||||||||||| ||||||| ||||| || ||| ||||||||| || ||||||| ||||    
T  27623156 tatgatgtaagttccactttcaatgatttgtagtaatttctgactatttatccttatatttatactaattg 27623086  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 446
Target Start/End: Complemental strand, 34487689 - 34487652
Alignment:
Q  409 tcacacaaataaagggaaggaattgggctttagcacca 446  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  34487689 tcacacaaattaagggaaggaattgggctttaggacca 34487652  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 28762243 - 28762337
Alignment:
Q  202 ctcttggttgcgtaggtaacaattactccagaagtgacttatagaggtgtgatctgtgctgttatggagcagcttgtgaggctgtatcatgattc 296  Q
    ||||||||||| ||||| ||||||||||| ||||| || | |||||| || | | |||||||||||||||||||||| |||||||| | ||||||    
T  28762243 ctcttggttgcttaggttacaattactcctgaagttacatctagaggggttaaccgtgctgttatggagcagcttgtaaggctgtaccgtgattc 28762337  T

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