View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4735-Insertion-9 (Length: 306)
Name: NF4735-Insertion-9
Description: NF4735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4735-Insertion-9 |
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| [»] scaffold0022 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold0022 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 306
Target Start/End: Complemental strand, 165954 - 165646
Alignment:
| Q |
7 |
aattatatcatctgaaccaatagtaggccggatttaaattttaaaatatgaaaaaa-tcctgaatcatgtcggtggcttggtcattagcgttgactggtt |
105 |
Q |
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|||||| ||||| ||||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||| |||| |||||| |
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| T |
165954 |
aattatttcatccgaaccgatagtacgccggatttaaattttaaaatctgaaaaaaatcctgaatcatgtcagtggcttggtcattagggttggctggtt |
165855 |
T |
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| Q |
106 |
ccatatgtttttcatgtgtttttacatggatg-----accacatgttcagacttctcttgattgtcgt---tacggcctatattagcattttagcaataa |
197 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| | ||||| | |||| |
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| T |
165854 |
ccatatgtttttcatgtgttgttacatggattctataaccacatgttcagacttctcttgattgtcgtcgttacggcctaagttaacgttttacctataa |
165755 |
T |
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| Q |
198 |
aaaccctcccattctacaccatttgtcattccaactcacgttatcttattctctttctttaaagttgattatgatgccaatgttttaccattgacctttc |
297 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||| |
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| T |
165754 |
aaacccttccattctacaccatttgtcattccaactcacgttatcttattctctttctttaaagttgattatcatgccaatgttttatccttgacctttc |
165655 |
T |
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| Q |
298 |
atttaaagg |
306 |
Q |
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||||||||| |
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| T |
165654 |
atttaaagg |
165646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 306
Target Start/End: Original strand, 23345808 - 23346116
Alignment:
| Q |
7 |
aattatatcatctgaaccaatagtaggccggatttaaattttaaaatatgaaaaaatcctgaatcatgtcggtggcttggtcattagcgttgactggttc |
106 |
Q |
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|||| ||||||| |||||||| ||||||||||| ||||||| |||| |||| ||| ||||||||| ||||||||||||| | | | | ||||||| |
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| T |
23345808 |
aattgtatcatccaaaccaatactaggccggattgaaattttgaaatccgaaacaatactgaatcatatcggtggcttggtaagcaagttcggctggttc |
23345907 |
T |
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| Q |
107 |
catatgtttttcatgtgttttta---------catggatgaccacatgttcagacttctcttgattgtcgttacggcctatattagcattttagcaataa |
197 |
Q |
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|||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| ||||| ||||| ||||| | |||| |
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| T |
23345908 |
catatgattttcatgtgttcttatattgattccatggatgaccacatgtccagacttctcttgattgtcgttactgcctaagttagcgttttacctataa |
23346007 |
T |
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| Q |
198 |
aaaccctcccattctacaccatttgtcattccaactcacgttatcttattctctttctttaaagttgattatgatgccaatgttttaccattgacctttc |
297 |
Q |
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| T |
23346008 |
aaaccctcccattctacaccatttcttattccaactcacattatctcattttctttctttagagttgtttatgaaaccaatgttttaccgctgtcctttc |
23346107 |
T |
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| Q |
298 |
atttaaagg |
306 |
Q |
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|| |||||| |
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| T |
23346108 |
atataaagg |
23346116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 2426762 - 2426802
Alignment:
| Q |
266 |
ttatgatgccaatgttttaccattgacctttcatttaaagg |
306 |
Q |
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| T |
2426762 |
ttatgatgtcaatgtttcaccattgacctttcatataaagg |
2426802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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