View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4735_high_1 (Length: 535)
Name: NF4735_high_1
Description: NF4735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4735_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 2 - 480
Target Start/End: Original strand, 44791862 - 44792355
Alignment:
| Q |
2 |
gaggaggagcagagaagcacaagcatgaagataagtacatgtaaaatgaaaaggcgagaaattcattggtgtatgcataaaatatagttatatggtacaa |
101 |
Q |
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|||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44791862 |
gaggaggaccaaagaagcacaagcatgaagataagtacgtgtaaaatgaaaaagcgagaaattcattggtgtatgcataaaatatagttatatggtacaa |
44791961 |
T |
|
| Q |
102 |
atgatgagga--------------gattattttgaagcttttgacaaaagacaaaagaaatatcaatgaagcaatttgcttggtcttacaatgaggtttc |
187 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44791962 |
atgatgcataaaatataaaatatagattattttgaagcttttgacaaaagacaaaagaaatatcaatgaagcaatttgcttggtcttacaatgaggtttc |
44792061 |
T |
|
| Q |
188 |
aaaacaagattttgagtactgtagggacattcttttgagtgtgtttgatcaaattatatagaagatatgttaaaacacaagagtttaattgtaatggaaa |
287 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44792062 |
aaaacatgattttgagtactgtagggacattcttttgagtgtgtttgatcaaattatatagaagatatgttaaaacacaagagtttaattgtaatggaaa |
44792161 |
T |
|
| Q |
288 |
tcaaattcggtcttactatgggaaacaacc-aaaacgtaatggaaatgatatgtgagagtttctatcgctaaagataaacaactaagactagttgaaaaa |
386 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44792162 |
tcaaattcggtcttactatgggaaacaaccaaaaacgtaatggaaatgatatgtgagagtttctatcgctaaagataaacaactaagactagttgaaaaa |
44792261 |
T |
|
| Q |
387 |
ctatttaatggatgaggaaaattacaatggagataatcaccaccaatttgaaccgagtcaaacttttattgcctataagtgattgatataaatg |
480 |
Q |
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| T |
44792262 |
ctatttaatggatgaggaaaattacaatggagataatcaccaccaatttgaaccgagtcaaacttttattgcctataagtgattgatataaatg |
44792355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 2 - 413
Target Start/End: Complemental strand, 35165755 - 35165343
Alignment:
| Q |
2 |
gaggaggagcagagaagcacaagcatgaagataagtacatgtaaaatgaaaaggcgagaaattcattggtgtatgcataaaatatagttatatggtacaa |
101 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35165755 |
gaggaggaccaaagaagcacaagcatgaagataagtacatgtaaaatgaaaaagcgagaaattcattggtgtatgcataaaatatagttatatggtacaa |
35165656 |
T |
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| Q |
102 |
atgatgaggagattattttgaagcttttgacaaaagacaaaagaaatatcaatgaagcaatttgcttggtcttacaatgaggtttcaaaacaagattttg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35165655 |
atgatgaggagattattttgaagcttttgacaaaagacaaaagaaatatcaatgaagcaatttgcttggtcttacaatgaggtttcaaaacatgattttg |
35165556 |
T |
|
| Q |
202 |
agtactgtagggacattc-ttttgagtgtgtttgatcaaattatatagaagatatgttaaaacacaagagtttaattgtaatggaaatcaaattcggtct |
300 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35165555 |
agtactgtatggacattctttttgagtgtgtttgatcaaattatatagaagatatgttaaaacacaagagtttaattgtaatggaaatcaaattcggtct |
35165456 |
T |
|
| Q |
301 |
tactatgggaaacaaccaaaacgtaatggaaatgatatgtgagagtttctatcgctaaagataaacaactaagactagttgaaaaactatttaatggatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35165455 |
tactatgggaaacaaccaaaacgtaatggaaatgatatgtgagagtttctatcgctaaagataaacaactaagactagttgaaaaactatttaatggatg |
35165356 |
T |
|
| Q |
401 |
aggaaaattacaa |
413 |
Q |
| |
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||||||||||||| |
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| T |
35165355 |
aggaaaattacaa |
35165343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 450 - 517
Target Start/End: Original strand, 39480439 - 39480506
Alignment:
| Q |
450 |
ttttattgcctataagtgattgatataaatgtattaacttttatgaattcttttattttacaaatgag |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39480439 |
ttttattgcctataagtgattgatataaatgtattaacttttatgaattcttttattttacaaatgag |
39480506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 44829220 - 44829257
Alignment:
| Q |
379 |
ttgaaaaactatttaatggatgaggaaaattacaatgg |
416 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
44829220 |
ttgaaaaactatttaatggatgaagaaaattacaatgg |
44829257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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