View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4735_high_3 (Length: 284)
Name: NF4735_high_3
Description: NF4735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4735_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 38314849 - 38314584
Alignment:
| Q |
1 |
actaagatggtccttcatacgtaatgtttattccatcatcacttttcaattgcttctcaccgttgctcttgcctccgtcgttgttttcgttcctccgatt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38314849 |
actaagatggtccttcatacgtaaggtttattccatcatcacttttcagttgcttctcaccgttgctgttgcctccgtcgttgttttcgttcctccgatt |
38314750 |
T |
|
| Q |
101 |
cctcgtttcttcgttagcaccactccaggcttggttctttacattgttctcatctttattcccttaatcagtacgtcttctcttcttttt-----attta |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38314749 |
cctcgtttcttcgttagcaccactccaggcttggttctttacattgttctcatctttattcccttaatcagtacgtcttctcttctttttattttattta |
38314650 |
T |
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| Q |
196 |
tacattatcatatgtataactaacttattactaactatattatttaggtcaaatactatacgcggtcttc |
265 |
Q |
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| T |
38314649 |
tacattatcatatgta----taacttattactaactatattatttaggtcaaatactatacgcggtcttc |
38314584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 38272728 - 38272639
Alignment:
| Q |
3 |
taagatggtccttcatacgtaatgtttattccatcatcacttttcaattgcttctcaccgttgctcttgcctccgtcgttgttttcgttc |
92 |
Q |
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|||||||| ||||||||| ||| || || |||||| |||| ||||| |||||||||||| |||| ||||||| || ||||||||||||| |
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| T |
38272728 |
taagatggcccttcatacttaaggtatactccatcctcacctttcagttgcttctcaccattgccgttgcctcagtagttgttttcgttc |
38272639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 38304365 - 38304308
Alignment:
| Q |
3 |
taagatggtccttcatacgtaatgtttattccatcatcacttttcaattgcttctcac |
60 |
Q |
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|||||| ||||||||| ||||| |||||||||||| |||| ||||| ||||||||||| |
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| T |
38304365 |
taagattgtccttcattcgtaaggtttattccatcctcacctttcagttgcttctcac |
38304308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 38276442 - 38276388
Alignment:
| Q |
3 |
taagatggtccttcatacgtaatgtttattccatcatcacttttcaattgcttct |
57 |
Q |
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|||||||||||||||||||||| || || ||||||||||| |||| |||||||| |
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| T |
38276442 |
taagatggtccttcatacgtaaggtatactccatcatcacaattcagttgcttct |
38276388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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