View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4735_high_5 (Length: 242)
Name: NF4735_high_5
Description: NF4735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4735_high_5 |
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| [»] scaffold1026 (1 HSPs) |
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| [»] scaffold0836 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 26196395 - 26196618
Alignment:
| Q |
1 |
tgcttaaatttccattctttctaggcctttcacggaggaggaaattaaagatttgattttcttagcagatggtaacaaaatcgggatctgaatgggttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26196395 |
tgcttaaatttccattctttctaggcctttcacggaggaggaaattaaagatttgattttcttagcagatggtaacaaaatcggggtctgaatgggttta |
26196494 |
T |
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| Q |
101 |
actttgcttttctcaaatctttttggggtgtcataagagcagaggtcaaagttatgtttgacgaatttcatgttaatgaagaactccctaaatatcttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
26196495 |
actttgcttttctcaaatctttttggggtgtcataagagcagtggtcaaagttatgtttgacaaatttcatgttaatgaagaactccttaaatatcttct |
26196594 |
T |
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| Q |
201 |
ttcctattttgttgctctaatttc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
26196595 |
ttcctattttgttgctctaatttc |
26196618 |
T |
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Target: scaffold1026 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1026
Description:
Target: scaffold1026; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 1492 - 1411
Alignment:
| Q |
140 |
cagaggtcaaagttatgtttgacgaatttcatgttaatgaagaactccctaaatatcttctttcctattttgttgctctaatt |
222 |
Q |
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| T |
1492 |
cagaggtaaaggttatgtttgacaaattttatgctaatgaa-aactccctaaatttcttcttttctattttgttgctctaatt |
1411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0836
Description:
Target: scaffold0836; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 3374 - 3453
Alignment:
| Q |
142 |
gaggtcaaagttatgtttgacgaatttcatgttaatgaagaactccctaaatatcttctttcctattttgttgctctaatt |
222 |
Q |
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| T |
3374 |
gaggtaaaggttatgtttgacaaattttatgctaatgaa-aactccctaaatttcttcttttctattttgttgctctaatt |
3453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 27374072 - 27373993
Alignment:
| Q |
142 |
gaggtcaaagttatgtttgacgaatttcatgttaatgaagaactccctaaatatcttctttcctattttgttgctctaatt |
222 |
Q |
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||||| || |||||||||| | || || ||| ||||||| |||||||||||| |||||||| |||||||||| |||||||| |
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| T |
27374072 |
gaggtaaaggttatgtttgtcaaaatttatgctaatgaa-aactccctaaatttcttcttttctattttgtttctctaatt |
27373993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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