View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4735_high_7 (Length: 227)
Name: NF4735_high_7
Description: NF4735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4735_high_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 45361705 - 45361493
Alignment:
| Q |
7 |
ttatcatctttcttaaatgaaattgaaaagagcatgtgnnnnnnnaggtgtatgtatgtatgtatgtaatgagcagaatacaaatactatttttaagcat |
106 |
Q |
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| T |
45361705 |
ttatcatctttcttaaatgaaattgaaaagagcatgtgtttttttaggtgtatgtatgta--------atgagcagaatacaaatactatttttaagctt |
45361614 |
T |
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| Q |
107 |
tgaactctccaaagggaagtttttatttctttggagaaagagaggtgttactgttattatctgataacttactttaggttgaatggaatttttcagtctg |
206 |
Q |
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| T |
45361613 |
tgaactctccaaagggaagtttttatttctttggagaaagagaggtgttactgttattatctgataacttactttaggttgaatggaattttccagtctg |
45361514 |
T |
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| Q |
207 |
tcagtaaaaggcatagaaaaa |
227 |
Q |
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| T |
45361513 |
tcaataaaaggcatagaaaaa |
45361493 |
T |
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