View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4735_low_10 (Length: 218)

Name: NF4735_low_10
Description: NF4735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4735_low_10
NF4735_low_10
[»] chr7 (5 HSPs)
chr7 (1-153)||(27100707-27100858)
chr7 (1-153)||(27177445-27177596)
chr7 (2-96)||(1877552-1877649)
chr7 (180-215)||(27100893-27100928)
chr7 (180-215)||(27177375-27177410)
[»] chr8 (1 HSPs)
chr8 (2-96)||(32827301-32827398)
[»] chr3 (1 HSPs)
chr3 (2-96)||(21522496-21522596)
[»] chr1 (2 HSPs)
chr1 (2-47)||(21383444-21383490)
chr1 (64-96)||(18555071-18555103)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 27100707 - 27100858
Alignment:
Q  1 tagtccaaagaagtgttttttccaatggataaagattaaagtgtaaagtaaatcattcaacaattatttaaatatattatatcatagaattgattttgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  27100707 tagtccaaagaagtgttttttccaatggataaagattaaagtgtaaagtaaatcattgaacagttatttaaatatattatatcatagaattgattttgta 27100806  T
Q  101 gtaattgtttttcacatcacaacaccactgaaagatataagtttcttttttct 153  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  27100807 gtaattgtttttcacatcacaa-accactgaaagatataagtttcttatttct 27100858  T

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Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 27177596 - 27177445
Alignment:
Q  1 tagtccaaagaagtgttttttccaatggataaagattaaagtgtaaagtaaatcattcaacaattatttaaatatattatatcatagaattgattttgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  27177596 tagtccaaagaagtgttttttccaatggataaagattaaagtgtaaagtaaatcattgaacagttatttaaatatattatatcatagaattgattttgta 27177497  T
Q  101 gtaattgtttttcacatcacaacaccactgaaagatataagtttcttttttct 153  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  27177496 gtaattgtttttcacatcacaa-accactgaaagatataagtttcttatttct 27177445  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 1877552 - 1877649
Alignment:
Q  2 agtccaaagaagtgttttttccaatggataaagattaaagtgtaaag---taaatcattcaacaattatttaaatatattatatcatagaattgattt 96  Q
    ||||||||||| ||| ||||||||||| |||| ||||||||||||||   |||| |||  || | ||||||||||||||||| |||||||||||||||    
T  1877552 agtccaaagaaatgtgttttccaatgggtaaaaattaaagtgtaaagcagtaaaccatggaagagttatttaaatatattatgtcatagaattgattt 1877649  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 27100893 - 27100928
Alignment:
Q  180 ccatgtcgtgcgttgtatcattatccttactgaaaa 215  Q
    ||||||||||||||||||||||||||||||||||||    
T  27100893 ccatgtcgtgcgttgtatcattatccttactgaaaa 27100928  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 27177410 - 27177375
Alignment:
Q  180 ccatgtcgtgcgttgtatcattatccttactgaaaa 215  Q
    ||||||||||||||||||||||||||||||||||||    
T  27177410 ccatgtcgtgcgttgtatcattatccttactgaaaa 27177375  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 32827301 - 32827398
Alignment:
Q  2 agtccaaagaagtgttttttccaatggataaagattaaagtgtaaagta---aatcattcaacaattatttaaatatattatatcatagaattgattt 96  Q
    ||||||||||||||| |||| ||| || |||| ||||||||||||||||   || |||  || | ||||||||||||||||| |||||||||||||||    
T  32827301 agtccaaagaagtgtgtttttcaaggggtaaaaattaaagtgtaaagtagtaaaccatggaagagttatttaaatatattatgtcatagaattgattt 32827398  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 21522496 - 21522596
Alignment:
Q  2 agtccaaagaagtgttttttccaatggataaagatta-----aagtgtaaagtaa-atcattcaacaattatttaaatatattatatcatagaattgatt 95  Q
    ||||||||||||||| ||||||||||| |||| |||      ||||||||||||| | |||  || | ||||||||||||||||| ||||||||||||||    
T  21522496 agtccaaagaagtgtgttttccaatgggtaaaaattccaaagaagtgtaaagtaataacatggaagagttatttaaatatattatgtcatagaattgatt 21522595  T
Q  96 t 96  Q
    |    
T  21522596 t 21522596  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 21383490 - 21383444
Alignment:
Q  2 agtccaaagaagtgttttttccaatgg-ataaagattaaagtgtaaa 47  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||    
T  21383490 agtccaaatcagtgttttttccaatggaataaagattaaagtgtaaa 21383444  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 18555071 - 18555103
Alignment:
Q  64 ttatttaaatatattatatcatagaattgattt 96  Q
    |||||||||||||||||||||||| ||||||||    
T  18555071 ttatttaaatatattatatcataggattgattt 18555103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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