View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4735_low_2 (Length: 436)
Name: NF4735_low_2
Description: NF4735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4735_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 427
Target Start/End: Original strand, 42171797 - 42172224
Alignment:
| Q |
12 |
atcatcatgggttaggtggtgataatgtggaaggtctttgccgtgatttgcatcctggtccggtgagtcttttgcattggagtgggaaagggaagccttg |
111 |
Q |
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| T |
42171797 |
atcagcatgggttaggtggtgataatgtggaaggtctttgccgtgatttgcatcctggtccggtgagtcttttgcattggagtgggaaagggaagccttg |
42171896 |
T |
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| Q |
112 |
gcttagaattgattccaagaagccgtgtccgttggatagtttatgggctccttatgatctctttcgccattcttcgccttcgcttttcaatgattcctaa |
211 |
Q |
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| T |
42171897 |
gcttagaattgattccaagaagccgtgtccgttggatagtttatgggctccttatgatctctttcgccattcttcgccttcgcttttcaatgattcctaa |
42171996 |
T |
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| Q |
212 |
attctggtttgagggttatggctgaaatgctccccactcgttcaaccaaagtgttagcgaaatgg-----------------aattgcaactcaattgtt |
294 |
Q |
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| T |
42171997 |
attcgggtttgagggttgttgctgaaatgctccccactcgttcgaccaaagtgttaacgaaatggttcgtcaattttgcatcaattgcaactcaattgtt |
42172096 |
T |
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| Q |
295 |
taagagattaatagtgttcctgtattgtatataaatggaattgaattgaattgaatggtgtaaaacctccatagagatgagttcgacggctacttaatct |
394 |
Q |
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| T |
42172097 |
taagagattaatagtgttcctgtattgtatataaatg-----gaattgaattgaatggtgtaaaacctccatagagatgagttcgatggctacttaatct |
42172191 |
T |
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| Q |
395 |
tgttgatcattcattataaacctccatgatgat |
427 |
Q |
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| T |
42172192 |
tgttgatcattcatcataaacctccatgatgat |
42172224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 52163949 - 52163893
Alignment:
| Q |
62 |
catcctggtccggtgagtcttttgcattggagtgggaaagggaagccttggcttaga |
118 |
Q |
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| T |
52163949 |
catcccggtcctgtgagtttgttgcattggagtgggaaaggtaaaccttgggttaga |
52163893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 33346724 - 33346785
Alignment:
| Q |
47 |
ctttgccgtgatttgcatcctggtccggtgagtcttttgcattggagtgggaaagggaagcc |
108 |
Q |
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| T |
33346724 |
ctttgtcgggatttgcatccaggcccggtgagtttgttgcattggagtggaaaagggaagcc |
33346785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 44641120 - 44641041
Alignment:
| Q |
12 |
atcatcatgggttaggtggtgataatgtggaaggtctttgccgtgatttgcatcctggtccggtgagtcttttgcattgg |
91 |
Q |
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| T |
44641120 |
atcaacatggtttaggtggtgataatgtgaaaggtagttgtagagatttgcatcctggtcctgttagtttgttgcattgg |
44641041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 48481681 - 48481724
Alignment:
| Q |
232 |
gctgaaatgctccccactcgttcaaccaaagtgttagcgaaatgg |
276 |
Q |
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| T |
48481681 |
gctgaaatgctcca-actcgttcgaccaaagtgttagcgaaatgg |
48481724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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