View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4736-Insertion-13 (Length: 317)
Name: NF4736-Insertion-13
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736-Insertion-13 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 317
Target Start/End: Original strand, 2115508 - 2115817
Alignment:
| Q |
8 |
tagccaccatgtttctcacagctccgatagctatctctgagcgtgaagttcgatgaagtccatttttgagaaattggagatccaactcaatatcacgtga |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2115508 |
tagccaccaggtttctcacagctccgatagctatctctgagcgtgaagttcgatgaagtccatttttgagaaattggagatccaactcaatatcacgtga |
2115607 |
T |
|
| Q |
108 |
aactgagtctgctttggttatagtccctcgaaacgcaattacataacgtggacttctatgtaaggtgttgttgcacatatac-ggtggaggcttgaattc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
2115608 |
aactgagtctgctttggttatagtccctcgaaatgcaattacataacatggacttctatgtaaggtgttattgcacatatacgggtggaggcttgaattc |
2115707 |
T |
|
| Q |
207 |
ataaattgcaccaaatatggagttatcaacatcatcaactagtgtatgaagcagctgaaagtgaaagaatgcccaccaaggaaatgctatagaatcggga |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2115708 |
ataaattgcaccaaatatggagttatcaacatcatcaactagtgtatgaagcagctgaaagtgaaagaatgccca-caaggaaatgctatagaatcggga |
2115806 |
T |
|
| Q |
307 |
cctttccgttg |
317 |
Q |
| |
|
||||||||||| |
|
|
| T |
2115807 |
cctttccgttg |
2115817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 125 - 310
Target Start/End: Original strand, 11873192 - 11873377
Alignment:
| Q |
125 |
ttatagtccctcgaaacgcaattacataacgtggacttctatgtaaggtgttgttgcacatatacggtggaggcttgaattcataaattgcaccaaatat |
224 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| || | | |||||||||||| |||||||||||||||||||| |
|
|
| T |
11873192 |
ttatagtccctcgaaaggcaattacataacgcggacttctatgtaaggtgtcattgcaaattgatgatggaggcttgaactcataaattgcaccaaatat |
11873291 |
T |
|
| Q |
225 |
ggagttatcaacatcatcaactagtgtatgaagcagctgaaagtgaaagaatgcccaccaaggaaatgctatagaatcgggacctt |
310 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||||||||| || ||||||| ||||||||||| ||||| || || |||||||| |
|
|
| T |
11873292 |
ggagtgatcaacatcatcaattagtgtatgatgcagctgaaaatggaagaatgtccaccaaggaagtgctagagcattgggacctt |
11873377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 11873078 - 11873139
Alignment:
| Q |
11 |
ccaccatgtttctcacagctccgatagctatctctgagcgtgaagttcgatgaagtccattt |
72 |
Q |
| |
|
||||||||||||| |||||| |||| ||||| | || |||||||||||||||||||||||| |
|
|
| T |
11873078 |
ccaccatgtttctgacagcttcgatggctatttttggtcgtgaagttcgatgaagtccattt |
11873139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 42050216 - 42050135
Alignment:
| Q |
82 |
tggagatccaactcaatatcacgtgaaactgagtctgctttggttatagtccctcgaaacgcaattacataacgtggacttc |
163 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||||| ||||||||||| ||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
42050216 |
tggatatctaactcaacatcacgtgaaactgagtgtgctttggttagagttcctcgaaaggcaatcacataacgtggacttc |
42050135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 287
Target Start/End: Complemental strand, 42050106 - 42050011
Alignment:
| Q |
192 |
tggaggcttgaattcataaattgcaccaaatatggagttatcaacatcatcaactagtgtatgaagcagctgaaagtgaaagaatgcccaccaagg |
287 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| || || |||||||||||| || |||| | |||||| |||||| || || |||| ||||||||| |
|
|
| T |
42050106 |
tggaggcttgaactcatagattgcaccaaagattgaagaatcaacatcatctacaagtggacgaagcaactgaaaatggaaaaatgtccaccaagg |
42050011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University