View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4736-Insertion-4 (Length: 689)
Name: NF4736-Insertion-4
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 195 - 531
Target Start/End: Original strand, 28466779 - 28467115
Alignment:
| Q |
195 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacactggtgggcatcttagctcaagcttgggagtggtggagtt |
294 |
Q |
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| T |
28466779 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacaccggtggtcatcttagctcaagcttgggagtggtggagtt |
28466878 |
T |
|
| Q |
295 |
atctgttgctcttcatcatgttttcgacactccggatgacaagatcatatgggatgttggccatcaggttgaacttttaatctcttttatatttgatctt |
394 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28466879 |
atcagttgctcttcatcatgttttcgacactccggatgacaagatcatatgggatgttggccatcaggttgaacttttaatctcttttatattttatctt |
28466978 |
T |
|
| Q |
395 |
gtaatttcaatagagatttttgtagggaaaattcaatcttcttgtagggaaaaattctcttgtaacaaaatttaagattttggatattatgtattcacgt |
494 |
Q |
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| T |
28466979 |
gtaatttcaatagagatttttgtagggaaaattgaatcttcttgtagggaaaaattctcttgtaacaaaatttaagatttttgatattatgtattcacgt |
28467078 |
T |
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| Q |
495 |
agtcactcgacttcagtcatccgatcttgatatgatg |
531 |
Q |
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| T |
28467079 |
agtcactcgacttcagtcatccgatctttatatgatg |
28467115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 195 - 394
Target Start/End: Original strand, 28475329 - 28475529
Alignment:
| Q |
195 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacactggtgggcatcttagctcaagcttgggagtggtggagtt |
294 |
Q |
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| T |
28475329 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacactggtgggcatcttagctcaagcttgggagtggtggagtt |
28475428 |
T |
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| Q |
295 |
atctgttgctcttcatcatgttttcgacactccggatgacaagatcatatgggatgttggccatcaggttgaacttttaatctc-ttttatatttgatct |
393 |
Q |
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| T |
28475429 |
atcagttgctcttcatcatgttttcgacactccggatgacaagatcatatgggatgttggccatcaggttgaacttttaatctcattttatatttgatct |
28475528 |
T |
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| Q |
394 |
t |
394 |
Q |
| |
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| T |
28475529 |
t |
28475529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 28466579 - 28466716
Alignment:
| Q |
8 |
ttggatacagttaattttccagttcatatgaagaacctgaccacagaggtttgaatcctttattaaacctaggaattatgtttaatatgttatggaataa |
107 |
Q |
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| T |
28466579 |
ttggatacagttaattttccagttcatatgaagaacctgaccacagaggtttgaatcctttattaaacctaggaattatgtttgatatgttatggaataa |
28466678 |
T |
|
| Q |
108 |
gcatggtacattttattgactgtgactaataccctttt |
145 |
Q |
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| T |
28466679 |
gcatggtacattttattgactgtgactaataccctttt |
28466716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 533 - 687
Target Start/End: Original strand, 28467144 - 28467287
Alignment:
| Q |
533 |
ctgaaatatgaagtcagaatatggaaagtttgatcaagttctagtctgtaaacgtgtaatggaaggcaaactatttcctaatatacgatccgttacacat |
632 |
Q |
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| T |
28467144 |
ctgaaatatgaagtcagaatattgaaagtttgatc-----------tgtaaacgtgtaatggaaggcaaactatttcctaatatacgatccgttacacat |
28467232 |
T |
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| Q |
633 |
tgttttaattgtggtccccaaccgcaacttttgccgcatctgatgtgttttttca |
687 |
Q |
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| T |
28467233 |
tgttttaattgtggtccccaaccgcaacttttgccgcatctgatgtgttttttca |
28467287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 28475000 - 28475132
Alignment:
| Q |
8 |
ttggatacagttaattttccagttcatatgaagaacctgaccacagaggtttgaatcctttat-taaacctaggaattatgtttaatatgttatggaata |
106 |
Q |
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| T |
28475000 |
ttggatacagttaattttccagttcatatgaagaacctgaccacagaggtttgaatcctttatcaaaaactaggatttatgtttcataggttatggaata |
28475099 |
T |
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| Q |
107 |
agcatggtacattttattgactgtgactaatac |
139 |
Q |
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| T |
28475100 |
tgtatggtacatttaattgactgtgactaatac |
28475132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 600 - 683
Target Start/End: Original strand, 28475755 - 28475838
Alignment:
| Q |
600 |
aaactatttcctaatatacgatccgttacacattg-ttttaattgtggtccccaaccgcaacttttgccgcatctgatgtgtttt |
683 |
Q |
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| T |
28475755 |
aaactatttcctaatatatgatccgttacacattgttttttattgtggt-cccaaccgcaacttttgccgcttcttttgtgtttt |
28475838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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