View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4736-Insertion-8 (Length: 543)
Name: NF4736-Insertion-8
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736-Insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 11054670 - 11054963
Alignment:
| Q |
8 |
tatattagctgttatttgctgttgagtccgaccagtaggggaattagattggccccggcgacaagtggttgtcgttgcattcgctgccaagcagtcctct |
107 |
Q |
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| T |
11054670 |
tatattacctgctatttgctgttgagtacgaccagtaggagaattagattggccc-gacgacaagtggttgtcgttgcattcgctgccaagcagtcctcc |
11054768 |
T |
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| Q |
108 |
attaaacgatgcccccgctcgagaacttgcaaacttaactctgttacatcttgccgcaccttgagattgcggtatttccaca--ctccaaaaatataaca |
205 |
Q |
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| T |
11054769 |
attaaacggcgcgcccactcgacaacttgcaaacttaactctgttacatcttgccacac-ttgagattaccatatttccacatactccaaaaaactagca |
11054867 |
T |
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| Q |
206 |
gccatttgttggtcatgccccggcgtgagctgctgtagcaacaagaaaatagcttcaactgttctaatagtttccatgctttatgcattgcatccca |
302 |
Q |
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| T |
11054868 |
gccatt-gttggtcatgccccggcgtgagctgctgtagcaacaagaaaatagcttcaactgttgtattagtttccatgctttatgtattgcgtccca |
11054963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 314 - 505
Target Start/End: Original strand, 11054940 - 11055136
Alignment:
| Q |
314 |
ccatgctttatgtattgcatcccatatagaaaagacattcgaggatcacatgtgcaaggtcatcgtgtgcatgtgcagaatcgcaactaacacaattagt |
413 |
Q |
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| T |
11054940 |
ccatgctttatgtattgcgtcccacagagggaagacattcaaagatcacatgtgcaaagtcttcgtgtgcttgtgcagaatcgcaactaacacaattagt |
11055039 |
T |
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| Q |
414 |
agg------ttgtatgtaatctttacattgataggtttttgttcccataagcaagaattg--cgttaaacgctccacaaaatagccttaaaagtgaagta |
505 |
Q |
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| T |
11055040 |
aggttgtaattgtacgtaatctttacattgataggttgttgtttccataagcaagaactgaacgtaaa---gtccacaaaatagccttaaaagtgaagta |
11055136 |
T |
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