View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4736-Insertion-9 (Length: 490)

Name: NF4736-Insertion-9
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4736-Insertion-9
NF4736-Insertion-9
[»] chr3 (1 HSPs)
chr3 (8-490)||(36744952-36745434)
[»] chr5 (1 HSPs)
chr5 (127-417)||(9605114-9605398)
[»] chr8 (11 HSPs)
chr8 (190-275)||(6457074-6457159)
chr8 (198-277)||(6363179-6363258)
chr8 (196-275)||(6450889-6450968)
chr8 (190-277)||(7459075-7459162)
chr8 (436-490)||(6274207-6274261)
chr8 (436-490)||(6288457-6288511)
chr8 (436-490)||(6331586-6331640)
chr8 (436-490)||(6390675-6390729)
chr8 (436-490)||(6409880-6409934)
chr8 (436-490)||(7458768-7458822)
chr8 (225-274)||(6370044-6370093)
[»] chr2 (1 HSPs)
chr2 (196-283)||(42688650-42688737)
[»] chr7 (1 HSPs)
chr7 (190-274)||(46710278-46710362)


Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Original strand, 36744952 - 36745434
Alignment:
Q  8 tgtattgtttcaaagaaaatcacacaagacattatatatgtcttcattgatttatcctcttgatgttgattgaatttgtattcatttacttgtggaacag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744952 tgtattgtttcaaagaaaatcacacaagacattatatatgtcttcattgatttatcctcttgatgttgattgaatttgtattcatttacttgtggaacag 36745051  T
Q  108 gcaattcaagacgagaggctattcattttggattaccatgacgcattcatgtcatacttgaagtatataaacaaacctattccaaagtcttatgccacta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745052 gcaattcaagacgagaggctattcattttggattaccatgacgcattcatgtcatacttgaagtatataaacaaacctattccaaagtcttatgccacta 36745151  T
Q  208 ggacaatccttttcttgaaagatgatgggactttaaagccattggccatcgaactaagtttgccacacccagatggcgaaaaatatggagctgtgagtag 307  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36745152 ggacaatcctattcttgaaagatgatgggactttaaagccattggccatcgaactaagtttgccacacccagatggcgaaaaatatggagctgtgagtaa 36745251  T
Q  308 agtgctgttgcctccagaaggacatggtgttcaaagaacaatttggcaattggccaaggcgtatgtagttgtaaatgacgcctgctttcaccaactcatg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745252 agtgctgttgcctccagaaggacatggtgttcaaagaacaatttggcaattggccaaggcgtatgtagttgtaaatgacgcctgctttcaccaactcatg 36745351  T
Q  408 agtcactggttgaatacccattgcgtgattgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattca 490  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36745352 agtcactggttgaatacacattgcgtgattgagccattcatcatagctacaaataggtgtctcagtgtggttcatcctattca 36745434  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 417
Target Start/End: Original strand, 9605114 - 9605398
Alignment:
Q  127 tattcattttggattaccatgacgcattcatgtcatacttgaagtatataaacaaacctattccaaagtcttatgccactaggacaatccttttcttgaa 226  Q
    ||||||| || ||||| ||||| ||||||||| |||  ||| || | |||||||||   || |||||| ||||||| |||||||||||||||||||| ||    
T  9605114 tattcatcttagattatcatgatgcattcatgccatttttggagaagataaacaaaa--atgccaaag-cttatgcaactaggacaatccttttcttaaa 9605210  T
Q  227 agatgatgggactttaaagccattggccatcgaactaagtttgccacacccagatggcgaaaaatatggagctgtgagtagagtgctgttgcctccagaa 326  Q
    ||||||||| ||||| |||||| ||||||| ||| | ||||| ||||| ||| |||| |  || ||||| ||||  || | |||  | |||||| ||||     
T  9605211 agatgatggaactttgaagccagtggccatagaattgagtttaccacatccaaatggtgttaagtatggtgctgaaagcaaagtcatcttgcctgcaga- 9605309  T
Q  327 ggacatggtgttcaaagaacaatttggcaattggccaaggcgtatgtagttgtaaatgacgcctgctttcaccaactcatgagtcactggt 417  Q
       || |||||| | || |||||||||| ||||||||||||  ||||| ||||||||||  | ||||  || ||||||||||| |||||||    
T  9605310 --ccaaggtgttgacagtacaatttggctattggccaaggctcatgtaattgtaaatgattcatgctaccatcaactcatgagccactggt 9605398  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 6457159 - 6457074
Alignment:
Q  190 caaagtcttatgccactaggacaatccttttcttgaaagatgatgggactttaaagccattggccatcgaactaagtttgccacac 275  Q
    ||||| |||||||||| || |||||| | ||||||||||||||||||||||| |||||| | || || ||| ||||||||||||||    
T  6457159 caaaggcttatgccacaagaacaatcttgttcttgaaagatgatgggactttgaagccaatagcaattgaattaagtttgccacac 6457074  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 6363258 - 6363179
Alignment:
Q  198 tatgccactaggacaatccttttcttgaaagatgatgggactttaaagccattggccatcgaactaagtttgccacaccc 277  Q
    ||||| ||||| || || ||||||||| |||||||||| ||||| |||||||||||||| |||||||||  |||||||||    
T  6363258 tatgctactagaaccattcttttcttgcaagatgatggaactttgaagccattggccattgaactaagtaggccacaccc 6363179  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 275
Target Start/End: Complemental strand, 6450968 - 6450889
Alignment:
Q  196 cttatgccactaggacaatccttttcttgaaagatgatgggactttaaagccattggccatcgaactaagtttgccacac 275  Q
    ||||||| || ||||||||| | || ||| |||||||||||||||| |||||||| ||||||||| |||| |||||||||    
T  6450968 cttatgctacaaggacaatcttgtttttgcaagatgatgggactttgaagccattagccatcgaattaagcttgccacac 6450889  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 277
Target Start/End: Complemental strand, 7459162 - 7459075
Alignment:
Q  190 caaagtcttatgccactaggacaatccttttcttgaaagatgatgggactttaaagccattggccatcgaactaagtttgccacaccc 277  Q
    ||||||| ||||| ||||| || || ||||||||| || ||||||| ||||| |||||||||||||| |||||||||  |||||||||    
T  7459162 caaagtcctatgcaactagaaccattcttttcttgcaaaatgatggaactttgaagccattggccattgaactaagtaggccacaccc 7459075  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 6274261 - 6274207
Alignment:
Q  436 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattca 490  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||||||||||||    
T  6274261 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcatcctattca 6274207  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 6288511 - 6288457
Alignment:
Q  436 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattca 490  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||||||||||||    
T  6288511 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcatcctattca 6288457  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 6331640 - 6331586
Alignment:
Q  436 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattca 490  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||    
T  6331640 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattca 6331586  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 6390729 - 6390675
Alignment:
Q  436 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattca 490  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||    
T  6390729 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattca 6390675  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 6409934 - 6409880
Alignment:
Q  436 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattca 490  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||    
T  6409934 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattca 6409880  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 7458822 - 7458768
Alignment:
Q  436 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattca 490  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||    
T  7458822 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattca 7458768  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 6370093 - 6370044
Alignment:
Q  225 aaagatgatgggactttaaagccattggccatcgaactaagtttgccaca 274  Q
    ||||||||||| ||||| || ||||||||||| || ||||||||||||||    
T  6370093 aaagatgatggaactttgaatccattggccattgagctaagtttgccaca 6370044  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 42688650 - 42688737
Alignment:
Q  196 cttatgccactaggacaatccttttcttgaaagatgatgggactttaaagccattggccatcgaactaagtttgccacacccagatgg 283  Q
    ||||||| |||||||||||||||||| | ||||| ||||| | |||||||||| |||| || ||| ||||||||||||| || |||||    
T  42688650 cttatgctactaggacaatccttttcctaaaagaagatggaaatttaaagccagtggcgattgaattaagtttgccacatcctgatgg 42688737  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 46710362 - 46710278
Alignment:
Q  190 caaagtcttatgccactaggacaatccttttcttgaaagatgatgggactttaaagccattggccatcgaactaagtttgccaca 274  Q
    ||||| ||||||| | ||||||||| |||||  || || |  |||||||||| |||||||||||||| ||| | |||||||||||    
T  46710362 caaagacttatgctagtaggacaattctttttctgcaacaaaatgggactttgaagccattggccattgaattgagtttgccaca 46710278  T

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