View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4736_high_11 (Length: 284)
Name: NF4736_high_11
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 1865013 - 1864763
Alignment:
| Q |
16 |
attatactagagttgcatataagtgtcagaaagtaagaagaaacctactagaattgatatgtgatccattaaaatttggtggtgatggaacaacgtgata |
115 |
Q |
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| T |
1865013 |
attatactagagttgcatataagtgtcagaaagtaagaagaaacctactagaattgatatgtgatccattaaaatttggtggtgatggaacaacgtgata |
1864914 |
T |
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| Q |
116 |
ctgaaatccggtagatgtaggaaatgatgaagcttttatttgtttcgagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgt |
215 |
Q |
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| T |
1864913 |
ctgaaatccgatagatgtaggaaatgatgaaacttttatttgttccgagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgt |
1864814 |
T |
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| Q |
216 |
tgcttcaacgccaatcttgtgtaataagcttgaaagaactcaggattttct |
266 |
Q |
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| T |
1864813 |
tgcttcaacgccaatcttgtgtaataagcttgaaagaactcaggattttct |
1864763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 51575688 - 51575937
Alignment:
| Q |
18 |
tatactagagttgcatataagtgtcagaaagtaagaagaaacctactagaattgatatgtgatccattaaaatttggtggtgatggaacaacgtgatact |
117 |
Q |
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| T |
51575688 |
tatattagagttgcatttaagtgtgagaaaataagaagaatcttactagcatggatatgtgatccattagaattttgtagtgatggaacaacatgatgat |
51575787 |
T |
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| Q |
118 |
gaaatccggtagatgtaggaaatgatgaagcttttatttgtttcgagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttg |
217 |
Q |
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| T |
51575788 |
gaaatccattagagataggtagagatgcaactatggtttgttccgagaccgttaattgcctttgattctccagcaatgcattgtattgttcaatttgttg |
51575887 |
T |
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| Q |
218 |
cttcaacgccaatcttgtgtaataagcttgaaagaactcaggattttctg |
267 |
Q |
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| T |
51575888 |
atacaaggccaatcttgtataataatctttgaagaacgcatcattttctg |
51575937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 35441487 - 35441589
Alignment:
| Q |
162 |
gagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttgcttcaacgccaatcttgtgtaataagcttgaaagaactcaggat |
261 |
Q |
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| T |
35441487 |
gagtccattaattctttttgtttttccaacaattcattgaatttctctatttgttgcttcaacgccaatcttgtataataagctttgaagaactcaggat |
35441586 |
T |
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| Q |
262 |
ttt |
264 |
Q |
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||| |
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| T |
35441587 |
ttt |
35441589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 35449928 - 35450030
Alignment:
| Q |
162 |
gagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttgcttcaacgccaatcttgtgtaataagcttgaaagaactcaggat |
261 |
Q |
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||||| ||||||| ||||| ||||| || ||| ||||||| | || ||||| | |||||||||||||||||| || |||||||| |||||||| |||| |
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| T |
35449928 |
gagtctattaattccttttgtttatgcattaatttgttgaattcctctatttgcttcttcaacgccaatcttgtatagtaagcttggaagaactctggat |
35450027 |
T |
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| Q |
262 |
ttt |
264 |
Q |
| |
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||| |
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| T |
35450028 |
ttt |
35450030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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