View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4736_high_18 (Length: 228)
Name: NF4736_high_18
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736_high_18 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 39227786 - 39228012
Alignment:
| Q |
2 |
catcaaactcattgtaataacctaacaaaaggtgtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagaga |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227786 |
catcaaactcattgtaataacctaacaaaaggtgtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagaga |
39227885 |
T |
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| Q |
102 |
caaatagttaagctgcaacatgttaccatattttgaaggaatttctccatagaaaaaatttcctccaaaattcaagtacttgagtttaggtaactcagtg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227886 |
caaatagttaagctgcaacatgttaccatattttgaaggaatttctccatagaaaaaatttcctccaaaattcaagtacttgagtttaggtaactcagtg |
39227985 |
T |
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| Q |
202 |
acaccaagagggagtgaacaattgaac |
228 |
Q |
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| T |
39227986 |
acaccaagagggagtgaacaattgaac |
39228012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 25546985 - 25547211
Alignment:
| Q |
2 |
catcaaactcattgtaataacctaacaaaaggtgtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagaga |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25546985 |
catcaaactcattgtaataacctaacaaaaggtgtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagaga |
25547084 |
T |
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| Q |
102 |
caaatagttaagctgcaacatgttaccatattttgaaggaatttctccatagaaaaaatttcctccaaaattcaagtacttgagtttaggtaactcagtg |
201 |
Q |
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| T |
25547085 |
caaatagttaagctgcaacatgttaccatattttgaaggaatttctccatagaaaaaatttcctccaaaattcaagtacttgagtttaggtaactcagtg |
25547184 |
T |
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| Q |
202 |
acaccaagagggagtgaacaattgaac |
228 |
Q |
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| T |
25547185 |
acaccaagaggtagtgaacaattgaac |
25547211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 16733375 - 16733310
Alignment:
| Q |
51 |
atttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagagacaaatagttaagctg |
116 |
Q |
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||||||||||||| ||||| ||||| ||||||||||| || |||||||||||| | |||||||| |
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| T |
16733375 |
atttccaagctcactaggtaaaaaaccactcaaatcatttccagcaagagacaaaaaattaagctg |
16733310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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