View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4736_high_2 (Length: 602)
Name: NF4736_high_2
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 3566045 - 3566424
Alignment:
| Q |
18 |
agaagatgaggatgaaaagtagattacacaacctttgtccactcctgacatagtccagaaggatatagactttcttaaaaactcatgggccaacattgtg |
117 |
Q |
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| T |
3566045 |
agaagatgaggatgaagagcagattacacaacctttgtccactcctgacatagtccagaaggatatagactttcttaaaaactcatgggccaacattgtg |
3566144 |
T |
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| Q |
118 |
gaaaataaagatgcagatacacgtttt-tacaaaccttagaaaagttcctgaagcaaacaccttacaagtcattgatagtgatggttttcagatgaaagt |
216 |
Q |
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| T |
3566145 |
gaaaataaagatgcagatacacgttttttacaaaccttagaaaagttcctgtagcaaacaccttacaagtcattgatagtgatggttttcatatgaaagt |
3566244 |
T |
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| Q |
217 |
atcaaaacaccaaaagaaagctcagaagaagctcagtcacacaggaatagaagttattacaaccagatcaaaggttataagacacctttcaaatgaagta |
316 |
Q |
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| T |
3566245 |
atcaaaacaccaaaagaaagctcagaagaagctcagtcacacaggaatagaagttattacaaccagatcaaaggttataagacacctttcaaatgaagta |
3566344 |
T |
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| Q |
317 |
tatatattggaatgtaataggcctagctaatcccccatcaagattagctttacaaatacttatttctcttcataaccttg |
396 |
Q |
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| T |
3566345 |
catatattggaatgtaataggcctagctaatccctcatcaagattagctttacaaatacttatttctcttcataaccttg |
3566424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 415 - 594
Target Start/End: Original strand, 3566418 - 3566597
Alignment:
| Q |
415 |
aaccttggatggattttgaacaattccctgaaagatggataactagtttacagcttaaaatgtttgccttgaacaatagacctaataggctctctaatat |
514 |
Q |
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| T |
3566418 |
aaccttggatggattttgaacaattccctgaaagatggataactagtttacagcttaaaatgtttgccttgaacaatagacctgataggctctctaatat |
3566517 |
T |
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| Q |
515 |
ctagtatttttgtaaaatctccatgaaccttgttattcttactcttgatgagcaacatgtttccttctcaattgatgatg |
594 |
Q |
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| T |
3566518 |
ctagtgtttttgtaaaatctccatgaaccttgttattcttattcttgatgagcaacatgtttccttctcaattgttgatg |
3566597 |
T |
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