View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4736_high_20 (Length: 217)
Name: NF4736_high_20
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 37111434 - 37111228
Alignment:
| Q |
1 |
aatgttgatgctcctttctctgttgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggcgctttaaaaggaatgacaacggttt |
100 |
Q |
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| T |
37111434 |
aatgttgatgctcctttctctgttgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggcgctttaaaaggaatgacaacggttt |
37111335 |
T |
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| Q |
101 |
tgttggttggtgctgttggtcaagctcgttatttaactcacattgcacgtactcacatgatgccgccttggtttgctcatgttgatgaaagaacaggaac |
200 |
Q |
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| T |
37111334 |
tgttggttggtgctgttggtcaagctcgttatttaactcacattgcacgtactcacatgatgccgccttggtttgctcatgttgatgaaagaacaggaac |
37111235 |
T |
|
| Q |
201 |
acctatg |
207 |
Q |
| |
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||||||| |
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| T |
37111234 |
acctatg |
37111228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 37119684 - 37119483
Alignment:
| Q |
6 |
tgatgctcctttctctgttgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggcgctttaaaaggaatgacaacggttttgttg |
105 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
37119684 |
tgatgctcctttctcagttgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggtgctttgaaaggaatgacaacggttttgttg |
37119585 |
T |
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| Q |
106 |
gttggtgctgttggtcaagctcgttatttaactcacattgcacgtactcacatgatgccgccttggtttgctcatgttgatgaaagaacaggaacaccta |
205 |
Q |
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| T |
37119584 |
gttagtgcggttggtcaagctcgttacttaacacacattgcacgtactcacatgatgccaccttggtttgctcttgttgatgaaagaacaggaacaccta |
37119485 |
T |
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| Q |
206 |
tg |
207 |
Q |
| |
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|| |
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| T |
37119484 |
tg |
37119483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 37136585 - 37136751
Alignment:
| Q |
22 |
gttgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggcgctttaaaaggaatgacaacggttttgttggttggtgctgttggtc |
121 |
Q |
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||||| |||||| |||||||| || |||||||| ||||||||| |||| || || || || |||||||| || |||||||||||| || ||| ||| |
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| T |
37136585 |
gttgcatttagttctgttggatggggatgggctaaatacattgttgcattgggagcattgaagggaatgacgactgttttgttggttaatgttgtcggtg |
37136684 |
T |
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| Q |
122 |
aagctcgttatttaactcacattgcacgtactcacatgatgccgccttggtttgctcatgttgatga |
188 |
Q |
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| T |
37136685 |
cctcacgttatttaactcacattgctcgtactcacatgatgcctccttggtttgctcttgttcatga |
37136751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 10681104 - 10681195
Alignment:
| Q |
34 |
gctgttggaatggattgggctaagtacattgtttcattaggcgctttaaaaggaatgacaacggttttgttggttggtgctgttggtcaagc |
125 |
Q |
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|||||||||||| | ||||||||||| |||||| |||| || || || ||||||||||| | ||||| | |||||||||||||||||||| |
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| T |
10681104 |
gctgttggaatgaaatgggctaagtatattgttgcatttggtgcattgaaaggaatgactagtgttttacttgttggtgctgttggtcaagc |
10681195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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