View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4736_high_3 (Length: 578)
Name: NF4736_high_3
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 10992756 - 10993317
Alignment:
| Q |
1 |
ccaaaaatcctaaacatcggcctacatccattagatgagtcaaagctaggaattcccctaagtataacacaatccaaagacaatgctctctcaggaggag |
100 |
Q |
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| T |
10992756 |
ccaaaaatcctaaacatcggcctacatccattagatgaatcaaagctaggaattcccctaagtataacacaatccaaagacaatgctctctcaggaggag |
10992855 |
T |
|
| Q |
101 |
gccactccggcgcaatgttcctcctcgcaacatattgaatataccgaagctgtgaaggctgtggattcaaaggtgacaacaactgcaacaatcccttggg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
10992856 |
gccactccggcgcaatgttcctcctcgcaacatattgaatataccgaagctgtgaaggctgtggattcaaaggtgacaacaactgcaacaaacccttagg |
10992955 |
T |
|
| Q |
201 |
tgcttctctatgaaccatttcaagtgtcctacgttcaccactatgaacccttctaaaaatcaacaaacttgccaacaaaaaagccaaaagtggccaaccc |
300 |
Q |
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| T |
10992956 |
tgcttctctatgaaccatttcaagtgtcctacgttcaccactatgaacccttctaaaaatcaacaaacttgccaacaaaaaagccaaaagtggccaaccc |
10993055 |
T |
|
| Q |
301 |
cctctttcacaatgaaacaaaatcacattttgatgattaccaagcaaaagccaactctcacaaacacgaagaaaatgctgaataagtgaaagtggcaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10993056 |
cctctttcacaatgaaacaaaatcacattttgatgattaccaagcaaaagccaactctcacaaacacgaagaaaatgctgaataagtgaaagtggcaaaa |
10993155 |
T |
|
| Q |
401 |
gaggacaaccctcatagttttttggataatccataacaataacatcataatcacacattatttcagcgaaattgcttcgcttttcgccgtcgcgaaaatt |
500 |
Q |
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| T |
10993156 |
gaggacaaccctcatagttttttggataatccataacaataacatcataatcacacattatttcagcgaaattgcttcgcttttcgccgtcgcgaaaatt |
10993255 |
T |
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| Q |
501 |
gaacgctagaaaggatgattctggaaactcttcatgtaattcagtcacgatttcgtgaagat |
562 |
Q |
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| T |
10993256 |
gaacgctagaaaggatgattctggaaactcttcatgtaattcagtcacgatttcgtgaagat |
10993317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 440 - 560
Target Start/End: Original strand, 11399820 - 11399945
Alignment:
| Q |
440 |
taacatcataatcacacattatttcagcgaaattgcttcgcttttcgccgtcgcgaaaattgaacgctagaaaggatgat--tctggaa---actcttca |
534 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||| |||||| |
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| T |
11399820 |
taacatcataatcacacattagttcagagaaattgcttcgcttttcgctgtcttgaaaattgaatgctagaaaggatgattctctggaacattatcttca |
11399919 |
T |
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| Q |
535 |
tgtaattcagtcacgatttcgtgaag |
560 |
Q |
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||||| |||||||||||||||||||| |
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| T |
11399920 |
tgtaaatcagtcacgatttcgtgaag |
11399945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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