View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4736_high_5 (Length: 461)
Name: NF4736_high_5
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 805338 - 805786
Alignment:
| Q |
1 |
ctaaaaacaaaaccaaattgttgtctta----tagagaagaaaacttcgagctatgaagtaccgacacagacatcgatactgaacattacacgatcactg |
96 |
Q |
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| T |
805338 |
ctaaaaacaaaaccaaattattgtcttagctatagagaagaagacttcgagctatgaaataccgacacagacatcgatactgaacattacacgatcactg |
805437 |
T |
|
| Q |
97 |
acagtgacacactgacacaaatacaaccttgaaagttgaaaccatgacataattaatttagttgtaggtgtgagatatcaaaagattttagatccaaatg |
196 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
805438 |
acagtgatacactgacacaaatacaaccttgaaagttgaaaccatgacataattaatttagttgtaggtgtgagatatcaaaagattttagatccaaatg |
805537 |
T |
|
| Q |
197 |
agataattaatgtagtttggtaaagtatatgtgatttaatgctcagagtgcagcctacctgcctatagtagtgtgtgttataaattggctcttcgcagct |
296 |
Q |
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| T |
805538 |
agataattaatgtagtttggtaaagtatatgtgatttaatgctcagagtgcagcctacctgcctatagtagtgtgtgttataaattggctcttcgcagct |
805637 |
T |
|
| Q |
297 |
attttatcatgctcttcacaggacatttgtagcatcttacaaccctgtcacaaagaagtagggtgaattaatcacctcggattaatctgagacacatgaa |
396 |
Q |
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| T |
805638 |
attttatcatgctcttcacaggacatttgtagcatcttacaaccctgtcaaaaagaagtagggtgaattaatcacctcggattaatctgagacacatgaa |
805737 |
T |
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| Q |
397 |
attcttttagtgcttgttttggatgcaagctgtagtttcccaatgttga |
445 |
Q |
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| T |
805738 |
attcttttagtgcttgttttggatgcaagctgtagtttcccaatgttga |
805786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 1266294 - 1266242
Alignment:
| Q |
149 |
ttaatttagttgtaggtgtgagatatcaaaagattttagatccaaatgagata |
201 |
Q |
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| T |
1266294 |
ttaatttagttgtaggtgtgagatatcaaaagattttagatctaaatgagata |
1266242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 228 - 411
Target Start/End: Original strand, 36053791 - 36053975
Alignment:
| Q |
228 |
tgatttaatgctcagagtgcagcctacctgcctatagtagtgtgtgttataaattggctcttcgcagctattttatcatgctcttcacaggacatttgta |
327 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36053791 |
tgatttaatgctcagattgcagcctacctgcctatagt---gtgtgttataaattggctctttgcagctattttatcatgctcttcacaggacatttgta |
36053887 |
T |
|
| Q |
328 |
gcatcttacaaccctgtcacaaagaagtagggt----gaattaatcacctcggattaatctgagacacatgaaattcttttagtgctt |
411 |
Q |
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|||||||||||||||||| | ||||| ||| ||||||||||||||||| ||| |||| |||| ||||||||||||||||| |
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| T |
36053888 |
gcatcttacaaccctgtccgggaaaagtaaggtcaaataattaatcacctcggataaatgtgagtcacaataaattcttttagtgctt |
36053975 |
T |
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