View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4736_high_8 (Length: 406)
Name: NF4736_high_8
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736_high_8 |
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| [»] scaffold0016 (2 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0719 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 60880 - 60675
Alignment:
| Q |
19 |
cctttataggtaaagcttcctctaggttgctatagaaccttcgatgtgggattattgtgagtgctagctgctttgctactaactacacttgtatatatac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60880 |
cctttataggtaaagcttcctctaggttgctatagaaccttctatgtgggattattgtgagtgctagctgctttgctactaactacacttgtatatatac |
60781 |
T |
|
| Q |
119 |
agagaaaaaagacaacactgtaaactttgagaagaagaagatttacctttctaattcttggagatagttttatatgctaatctttaaaacattgaactgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
60780 |
agagaaaaaagacaacactgtaaactttgagaagaagaagatttacctttctaattcttggagatagttttatatgctaatctttaaaactttgaactgt |
60681 |
T |
|
| Q |
219 |
acatgt |
224 |
Q |
| |
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|||||| |
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| T |
60680 |
acatgt |
60675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 39305 - 39146
Alignment:
| Q |
25 |
taggtaaagcttcctctaggttgctatagaaccttcgatgtgggattattgtgagtgctagctgctttgctactaactacacttgtatatatacagagaa |
124 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39305 |
taggtaaagcttcctctaggttgcaatagaaccttcgatgtgggattattgtgagtgctagctgctttgctactaactacacttgtatatatacagagaa |
39206 |
T |
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| Q |
125 |
aaaagacaacactgtaaactttgagaagaagaagatttacctttctaattcttggagata |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39205 |
aaaagacaacactgtaaactttgagaagaagaagatttacctttctaattcttggagata |
39146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 20466 - 20631
Alignment:
| Q |
19 |
cctttataggtaaagcttcctctaggttgctatagaaccttcgatgtgggattattgtgagtgctagctgctttgctactaactacacttgtatatatac |
118 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20466 |
cctttataggtaaagcttcctctacgttgctatagaaccttcgatgtgggactattgtgagtgctagctgctttgctactaactacacttttatatatac |
20565 |
T |
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| Q |
119 |
agagaaaaaagacaacactgtaaactttgagaagaagaagatttacctttctaattcttggagata |
184 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |||||| |
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| T |
20566 |
agagaaaaaaggcaacactgtaaactttgagaagaagcagatttacctttctaagtcttagagata |
20631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0719 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0719
Description:
Target: scaffold0719; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 6396 - 6559
Alignment:
| Q |
22 |
ttataggtaaagcttcctctaggttgctatagaaccttcgatgtgggattattgt-gagtgctagctgctttgctactaactacacttgtatatatacag |
120 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||| |||| | |||||||| || ||||||||||||||||||||||||||||||| |
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| T |
6396 |
ttataggtaaagcttcctctaggttgctatagaaacttagatgtgggactattattgagtgctaactactttgctactaactacacttgtatatatacaa |
6495 |
T |
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| Q |
121 |
agaaaaaagacaacactgtaaactttgagaagaagaagatttacctttctaattcttggagata |
184 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6496 |
agaaaaaagacaacactataaactttgagaagaagaagatttacctttctaattcttggagata |
6559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 21135601 - 21135753
Alignment:
| Q |
19 |
cctttataggtaaagcttcctctaggttgctatagaaccttcgatgtgggattattgtgagtgctagctgctttgctactaactacacttgtatatatac |
118 |
Q |
| |
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||||||||||||||||||| | |||||| |||||||||||| |||||||| |||||| |||||||||||||||| || |||||| |
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| T |
21135601 |
cctttataggtaaagcttcttgtaggttaatatagaaccttcaatgtgggactattgtaagtgctagctgctttg----------------ta-atatac |
21135683 |
T |
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| Q |
119 |
agagaaaaaagacaacactgtaaactttgagaagaagaagatttacctttctaattcttggagatagtttt |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| |
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| T |
21135684 |
agagaaaaaagacaacactgtaaactttgagaagaagaaga-ttacctttctaattcttggggataatttt |
21135753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 14551084 - 14551052
Alignment:
| Q |
294 |
gatttccctaacctaaccacccgcattaaactc |
326 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
14551084 |
gatttctctaacctaaccacccgcattaaactc |
14551052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 29452736 - 29452768
Alignment:
| Q |
294 |
gatttccctaacctaaccacccgcattaaactc |
326 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
29452736 |
gatttctctaacctaaccacccgcattaaactc |
29452768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 29467210 - 29467242
Alignment:
| Q |
294 |
gatttccctaacctaaccacccgcattaaactc |
326 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
29467210 |
gatttctctaacctaaccacccgcattaaactc |
29467242 |
T |
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