View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4736_high_9 (Length: 389)

Name: NF4736_high_9
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4736_high_9
NF4736_high_9
[»] chr3 (6 HSPs)
chr3 (14-373)||(16296953-16297318)
chr3 (39-110)||(14307403-14307474)
chr3 (39-110)||(46248744-46248815)
chr3 (335-373)||(48743619-48743657)
chr3 (66-115)||(46189684-46189733)
chr3 (239-302)||(14307253-14307317)
[»] chr2 (2 HSPs)
chr2 (56-158)||(33570985-33571087)
chr2 (46-120)||(6823600-6823674)
[»] chr4 (3 HSPs)
chr4 (22-158)||(9690570-9690706)
chr4 (24-143)||(46543141-46543260)
chr4 (19-143)||(52617718-52617842)
[»] chr1 (2 HSPs)
chr1 (19-170)||(28358025-28358176)
chr1 (77-110)||(40563470-40563503)
[»] chr7 (3 HSPs)
chr7 (49-158)||(8723007-8723116)
chr7 (19-158)||(27723959-27724098)
chr7 (49-98)||(8724065-8724114)
[»] chr5 (2 HSPs)
chr5 (19-115)||(42259470-42259566)
chr5 (19-60)||(42039559-42039600)


Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 373
Target Start/End: Original strand, 16296953 - 16297318
Alignment:
Q  14 gagatgaagattgtgggtgtggaaagaagacatgttagaggagtgtaagattttacttgacactgttgttgtgcagtctaatgtttctgacaggtggtag 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16296953 gagaagaagattgtgggtgtggaaagaagacatgttagaggagtgtaagattttacttgacactgttgttgtgcagtctaatgtttctgacaggtggcag 16297052  T
Q  114 tgagatctggataatcatgatggttatacagtgagaggcgcatataagatcctgacatcttcagtgtcccctaccgttgatgatgcaaccaaagaccttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16297053 tgagatctggataatcatgatggttatacagtgagaggcgcatataagatcctgacatcttcagtgtcccctaccgttgatgatgcaaccaaagaccttg 16297152  T
Q  214 tcttgcataaacaggttccattatattgaaggcttccattgtcgcctggcgtttgcgaaggacagattaccatctagactcaaccttcagagacatgtct 313  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16297153 tcttgcataaataggttccattatattgaaggcttccattgtcgcctggcgtttgcgaaggacagattaccatctagactcaaccttcagagacatgtct 16297252  T
Q  314 gcttcaggccgcagacactac------atcggggtgtggcaatactgagtcggcatcccacttgtt 373  Q
    |||||||||||||||||||||      ||| |||||||||||||||||||||||||||||||||||    
T  16297253 gcttcaggccgcagacactacatgtgtatcagggtgtggcaatactgagtcggcatcccacttgtt 16297318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 14307474 - 14307403
Alignment:
Q  39 gaagacatgttagaggagtgtaagattttacttgacactgttgttgtgcagtctaatgtttctgacaggtgg 110  Q
    ||||||||||||| |||||||| |  ||||||||||||| |||||||||||||||||||||||||| |||||    
T  14307474 gaagacatgttaggggagtgtagggctttacttgacactattgttgtgcagtctaatgtttctgaccggtgg 14307403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 46248744 - 46248815
Alignment:
Q  39 gaagacatgttagaggagtgtaagattttacttgacactgttgttgtgcagtctaatgtttctgacaggtgg 110  Q
    |||||| |||||| |||||||| |  ||||||||||| |||||||||||| |||||||||| ||||||||||    
T  46248744 gaagacttgttaggggagtgtagggctttacttgacaatgttgttgtgcaatctaatgtttatgacaggtgg 46248815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 48743619 - 48743657
Alignment:
Q  335 atcggggtgtggcaatactgagtcggcatcccacttgtt 373  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  48743619 atcgaggtgtggcagtactgagtcggcatcccacttgtt 48743657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 46189733 - 46189684
Alignment:
Q  66 ttacttgacactgttgttgtgcagtctaatgtttctgacaggtggtagtg 115  Q
    |||||| ||| | ||||||||||| || ||||||||||||||||||||||    
T  46189733 ttacttaacaattttgttgtgcagactgatgtttctgacaggtggtagtg 46189684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 14307317 - 14307253
Alignment:
Q  239 ttgaaggcttccattgtcgcctggcgtttg-cgaaggacagattaccatctagactcaaccttca 302  Q
    ||||||||||||||||| ||||||||||||  ||||||||  |||||| |||||  |||||||||    
T  14307317 ttgaaggcttccattgttgcctggcgtttgttgaaggacaagttaccaactagaaacaaccttca 14307253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 33571087 - 33570985
Alignment:
Q  56 gtgtaagattttacttgacactgttgttgtgcagtctaatgtttctgacaggtggtagtgagatctggataatcatgatggttatacagtgagaggcgca 155  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||  ||| ||| | ||||||||||||||||||||||||||||    
T  33571087 gtgtatgattttacttgacacagttgttgtgcagtctaatgtttctgacaggtgatagtggaatccggacactcatgatggttatacagtgagaggcgca 33570988  T
Q  156 tat 158  Q
    |||    
T  33570987 tat 33570985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 6823674 - 6823600
Alignment:
Q  46 tgttagaggagtgtaagattttacttgacactgttgttgtgcagtctaatgtttctgacaggtggtagtgagatc 120  Q
    |||||| |||||||| |  ||||||||||| ||||||||||||||||||||||| |||||||||| |||| ||||    
T  6823674 tgttaggggagtgtagggctttacttgacaatgttgttgtgcagtctaatgtttatgacaggtggcagtgggatc 6823600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 9690706 - 9690570
Alignment:
Q  22 gattgtgggtgtggaaagaagacatgttagaggagtgtaagattttacttgacactgttgttgtgcagtctaatgtttctgacaggtggtagtgagatct 121  Q
    |||||||||||||| | || || ||| |||| ||||||| | |||||||||| ||||||  ||||||| |||||||||||||||||||| |||||||||     
T  9690706 gattgtgggtgtgggaggaggagatggtagaagagtgtaggcttttacttgatactgtttgtgtgcagactaatgtttctgacaggtggcagtgagatcc 9690607  T
Q  122 ggataatcatgatggttatacagtgagaggcgcatat 158  Q
    ||||| |||||||||||||| ||||| ||| ||||||    
T  9690606 ggatactcatgatggttatagagtgaaaggtgcatat 9690570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 46543260 - 46543141
Alignment:
Q  24 ttgtgggtgtggaaagaagacatgttagaggagtgtaagattttacttgacactgttgttgtgcagtctaatgtttctgacaggtggtagtgagatctgg 123  Q
    ||||||| |||| | || || ||| |||| ||||||| | |||||||||| ||||||  |||||||||||||||||||||||| |||||||| |||| ||    
T  46543260 ttgtgggcgtgggaggaggagatggtagaagagtgtaggcttttacttgatactgtttgtgtgcagtctaatgtttctgacagatggtagtgggatccgg 46543161  T
Q  124 ataatcatgatggttataca 143  Q
    ||| ||||||||||||||||    
T  46543160 atattcatgatggttataca 46543141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 52617718 - 52617842
Alignment:
Q  19 gaagattgtgggtgtggaaagaagacatgttagaggagtgtaagattttacttgacactgttgttgtgcagtctaatgtttctgacaggtggtagtgaga 118  Q
    |||| |||||||||||| | ||||| ||| |||||||||||| ||||||| |||||| ||||||||| ||   ||||||||||||||||||| |||| ||    
T  52617718 gaagcttgtgggtgtgggaggaagagatggtagaggagtgtaggattttagttgacattgttgttgtacatgataatgtttctgacaggtggcagtggga 52617817  T
Q  119 tctggataatcatgatggttataca 143  Q
    |  ||||| | ||||||| ||||||    
T  52617818 ttcggatactaatgatggctataca 52617842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 28358176 - 28358025
Alignment:
Q  19 gaagattgtgggtgtggaaagaagacatgttagaggagtgtaagattttacttgacactgttgttgtgcagtctaatgtttctgacaggtggtagtgaga 118  Q
    |||||||||||| |||| ||||||| ||| |||||||||||| | | |||||||||| |||| ||||| |||||| |||||||||||||||| |||| ||    
T  28358176 gaagattgtgggcgtgggaagaagagatggtagaggagtgtaggttgttacttgacaatgtttttgtgtagtctactgtttctgacaggtggcagtggga 28358077  T
Q  119 tctggataatcatgatggttatacagtgagaggcgcatataagatcctgaca 170  Q
    ||  ||   | |||||||||||||||||||||| || ||| |||| ||||||    
T  28358076 tccagactctaatgatggttatacagtgagaggggcttatcagattctgaca 28358025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 40563470 - 40563503
Alignment:
Q  77 tgttgttgtgcagtctaatgtttctgacaggtgg 110  Q
    ||||||||||||||||||||||||||| ||||||    
T  40563470 tgttgttgtgcagtctaatgtttctgataggtgg 40563503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 8723007 - 8723116
Alignment:
Q  49 tagaggagtgtaagattttacttgacactgttgttgtgcagtctaatgtttctgacaggtggtagtgagatctggataatcatgatggttatacagtgag 148  Q
    |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||| ||||  || |  |||||||| || ||||||||    
T  8723007 tagaggagtgtaggattttacttgacaatgttgttgtgcagcctaatgtttctgacaggtggcagtgggatccagacatccatgatggatacacagtgag 8723106  T
Q  149 aggcgcatat 158  Q
    ||| ||||||    
T  8723107 aggtgcatat 8723116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 27723959 - 27724098
Alignment:
Q  19 gaagattgtgggtgtggaaagaagacatgttagaggagtgtaagattttacttgacactgttgttgtgcagtctaatgtttctgacaggtggtagtgaga 118  Q
    ||||||||||||  ||| | |||||| |||||| |||||||| |  ||||||||| | |||||| ||||||| |||||||| |||||||||| |||| ||    
T  27723959 gaagattgtgggcatgggaggaagacttgttaggggagtgtagggctttacttgataatgttgtcgtgcagtataatgtttatgacaggtggcagtggga 27724058  T
Q  119 tctggataatcatgatggttatacagtgagaggcgcatat 158  Q
    ||  |||   || || ||||||||||||||||| ||||||    
T  27724059 tccagatccccacgaaggttatacagtgagaggtgcatat 27724098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 8724065 - 8724114
Alignment:
Q  49 tagaggagtgtaagattttacttgacactgttgttgtgcagtctaatgtt 98  Q
    |||||||||||| ||||||| || ||| ||||||||||||| ||||||||    
T  8724065 tagaggagtgtaggattttatttaacaatgttgttgtgcagcctaatgtt 8724114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 42259566 - 42259470
Alignment:
Q  19 gaagattgtgggtgtggaaagaagacatgttagaggagtgtaagattttacttgacactgttgttgtgcagtctaatgtttctgacaggtggtagtg 115  Q
    ||||||||||| ||||| ||||||| |||||||||| ||||| | | |||||||| | |||  |||||||| ||||| ||  |||||||||| ||||    
T  42259566 gaagattgtggatgtgggaagaagaaatgttagaggggtgtaggctattacttgatagtgtatttgtgcaggctaatattcttgacaggtggcagtg 42259470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 42039559 - 42039600
Alignment:
Q  19 gaagattgtgggtgtggaaagaagacatgttagaggagtgta 60  Q
    |||| |||||||||||| ||||||| ||||||||||||||||    
T  42039559 gaaggttgtgggtgtgggaagaagaaatgttagaggagtgta 42039600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University