View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4736_low_1 (Length: 1022)

Name: NF4736_low_1
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4736_low_1
NF4736_low_1
[»] chr8 (5 HSPs)
chr8 (718-999)||(22512355-22512636)
chr8 (735-915)||(2688803-2688984)
chr8 (722-796)||(26377776-26377850)
chr8 (723-787)||(22922162-22922226)
chr8 (750-857)||(23573220-23573334)
[»] chr4 (7 HSPs)
chr4 (722-871)||(22716287-22716440)
chr4 (722-871)||(22988777-22988930)
chr4 (746-915)||(10494553-10494726)
chr4 (744-798)||(9260315-9260369)
chr4 (843-892)||(6659756-6659805)
chr4 (735-811)||(7635027-7635103)
chr4 (740-787)||(13085423-13085470)
[»] chr3 (9 HSPs)
chr3 (735-915)||(8536655-8536839)
chr3 (718-865)||(365858-366008)
chr3 (718-787)||(3064046-3064115)
chr3 (931-996)||(35724428-35724493)
chr3 (931-992)||(35708529-35708590)
chr3 (931-992)||(35726234-35726295)
chr3 (718-759)||(43304265-43304306)
chr3 (718-798)||(2472964-2473044)
chr3 (846-892)||(43304322-43304368)
[»] chr5 (3 HSPs)
chr5 (722-893)||(18252071-18252246)
chr5 (723-833)||(21845202-21845316)
chr5 (746-787)||(19677630-19677671)
[»] chr2 (9 HSPs)
chr2 (735-915)||(280286-280469)
chr2 (718-807)||(27952632-27952721)
chr2 (750-912)||(32162254-32162419)
chr2 (718-856)||(31635975-31636117)
chr2 (723-837)||(35681913-35682031)
chr2 (723-787)||(2165637-2165701)
chr2 (746-871)||(33053094-33053222)
chr2 (718-787)||(22011145-22011214)
chr2 (723-796)||(23457389-23457461)
[»] chr1 (8 HSPs)
chr1 (718-915)||(13441896-13442095)
chr1 (718-915)||(40805488-40805689)
chr1 (718-915)||(31915167-31915370)
chr1 (723-811)||(10926933-10927022)
chr1 (810-892)||(8220155-8220236)
chr1 (741-798)||(8966030-8966087)
chr1 (723-857)||(10927792-10927929)
chr1 (718-751)||(50857751-50857784)
[»] scaffold0054 (3 HSPs)
scaffold0054 (735-906)||(48954-49127)
scaffold0054 (722-846)||(10349-10477)
scaffold0054 (739-864)||(37396-37524)
[»] chr7 (8 HSPs)
chr7 (718-914)||(1217467-1217665)
chr7 (718-811)||(4303146-4303239)
chr7 (718-864)||(13882990-13883141)
chr7 (722-873)||(11001085-11001240)
chr7 (735-871)||(1369488-1369629)
chr7 (722-869)||(8915432-8915582)
chr7 (724-798)||(1786426-1786500)
chr7 (851-915)||(11001256-11001320)
[»] chr6 (15 HSPs)
chr6 (722-856)||(22873500-22873638)
chr6 (722-846)||(22888953-22889081)
chr6 (722-846)||(22910496-22910624)
chr6 (750-890)||(34374074-34374218)
chr6 (735-872)||(18203109-18203249)
chr6 (723-854)||(12881715-12881849)
chr6 (723-787)||(3541960-3542024)
chr6 (723-787)||(30049630-30049694)
chr6 (723-787)||(30051917-30051981)
chr6 (718-765)||(11194401-11194448)
chr6 (746-865)||(12778692-12778813)
chr6 (734-801)||(32361106-32361173)
chr6 (839-915)||(8047760-8047836)
chr6 (744-787)||(8047661-8047704)
chr6 (749-798)||(18720020-18720069)
[»] scaffold0024 (2 HSPs)
scaffold0024 (826-915)||(144274-144363)
scaffold0024 (727-912)||(145364-145555)
[»] scaffold0110 (1 HSPs)
scaffold0110 (723-787)||(45928-45992)
[»] scaffold0240 (1 HSPs)
scaffold0240 (808-873)||(15676-15741)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 718 - 999
Target Start/End: Original strand, 22512355 - 22512636
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatgttgact 817  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22512355 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattctgataagaagcttcccatgttgact 22512454  T
Q  818 catccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaatt 917  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512455 catccaacgaacataagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaatt 22512554  T
Q  918 gatttaccaggatcccattgtttaattgcatcccatatttgaagaccatcattgacaagaggatagtcttcaattattaact 999  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512555 gatttaccaggatcccattgtttaattgcatcccatatttgaagaccatcattgacaagaggatagtcttcaattattaact 22512636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 735 - 915
Target Start/End: Complemental strand, 2688984 - 2688803
Alignment:
Q  735 aaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgactcatccaacgaaca 830  Q
    |||| ||||| ||| |||||||||||||| | |||||||||| | |||||||| ||| | |||   || ||||||||    ||||||| ||||| |||||    
T  2688984 aaaccctcctacatgagtctcctccacctatgaagaactcgatcacgagttctcattctaatag--agtttcccatgcatgttgactcctccaatgaaca 2688887  T
Q  831 agagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 915  Q
     |||| | ||||| |||||||||||| |||||||| |||||||  || ||| | ||||||||||| |||||||||| ||||||||    
T  2688886 tgagatcaccctcatggatcccattgggtgaaatgaaaagatggtttagttcg-aaaatatagtagttgcctttatcccattgaa 2688803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 722 - 796
Target Start/End: Complemental strand, 26377850 - 26377776
Alignment:
Q  722 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgat 796  Q
    ||||||||||| ||||| ||||| |||||||||||||||||| | |||||||||||||| |||||| ||| ||||    
T  26377850 taaattactaagaaaaccctcctacatcagtctcctccacctttgaagaactcgaccccaagttctcattctgat 26377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 723 - 787
Target Start/End: Original strand, 22922162 - 22922226
Alignment:
Q  723 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 787  Q
    ||||||||||  || | ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  22922162 aaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttct 22922226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 750 - 857
Target Start/End: Complemental strand, 23573334 - 23573220
Alignment:
Q  750 agtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagag---accgccct 842  Q
    |||||||||||||||| ||||||||||||| ||||| | ||| ||||||  |||||||    ||||||||||| ||||| |||||| ||   ||| ||||    
T  23573334 agtctcctccacctctgaagaactcgacccggagttttcattttgataaagagcttcccatgcatgttgactcctccaatgaacaaaagaccaccaccct 23573235  T
Q  843 cctggatcccattga 857  Q
    ||||| |||||||||    
T  23573234 cctggttcccattga 23573220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 2e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 722 - 871
Target Start/End: Complemental strand, 22716440 - 22716287
Alignment:
Q  722 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgact 817  Q
    |||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||  |||||||    ||||||||||    
T  22716440 taaattactaataaaactcaactgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgact 22716341  T
Q  818 catccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaaga 871  Q
    | ||||| |||||||||||| |||||||| ||| ||||||||||||||||||||    
T  22716340 cctccaatgaacaagagaccaccctcctgaatcacattgagtgaaatgcaaaga 22716287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 722 - 871
Target Start/End: Original strand, 22988777 - 22988930
Alignment:
Q  722 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgact 817  Q
    |||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||  |||||||    ||||||||||    
T  22988777 taaattactaataaaactcaactgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgact 22988876  T
Q  818 catccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaaga 871  Q
    | ||||| |||||||||||| |||||||| ||| ||||||||||||||||||||    
T  22988877 cctccaatgaacaagagaccaccctcctgaatcacattgagtgaaatgcaaaga 22988930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 746 - 915
Target Start/End: Complemental strand, 10494726 - 10494553
Alignment:
Q  746 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgactcatccaacgaacaagagaccgccc 841  Q
    ||||||||| ||| || ||| |||||||||||| | |||||| ||  ||||||  |||||||||||    | ||||| ||||| |||||||||||| |||    
T  10494726 catcagtcttctctacttctgaagaactcgacctcaagttctgatcctgataaatagcttcccatgcatgtcgactcctccaatgaacaagagaccaccc 10494627  T
Q  842 tcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 915  Q
    |  || || ||| ||||||||||||||||||   ||||||| |||||||||| | ||||| |||| ||||||||    
T  10494626 ttttgaattccactgagtgaaatgcaaagatagtttggtttaaaaaatatagcagttgcccttatcccattgaa 10494553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 744 - 798
Target Start/End: Complemental strand, 9260369 - 9260315
Alignment:
Q  744 tgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataa 798  Q
    ||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||    
T  9260369 tgcatcaatctcctctacgtctaaagaactcgaccccgagttcttattttgataa 9260315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 843 - 892
Target Start/End: Original strand, 6659756 - 6659805
Alignment:
Q  843 cctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatata 892  Q
    |||||||||||||||||||||||| |||||   |||||||||||||||||    
T  6659756 cctggatcccattgagtgaaatgccaagattgtttggtttgaaaaatata 6659805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 735 - 811
Target Start/End: Complemental strand, 7635103 - 7635027
Alignment:
Q  735 aaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg 811  Q
    |||||||||  ||||||||||||||| |||| |||||||||||||| | |||| ||| | |||| ||||| ||||||    
T  7635103 aaactctcccacatcagtctcctccatctctgaagaactcgaccccaaattctcattctaataaaaagctccccatg 7635027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 787
Target Start/End: Original strand, 13085423 - 13085470
Alignment:
Q  740 ctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 787  Q
    ||||| |||||||||| |||| |||| |||||||||||||||||||||    
T  13085423 ctcctacatcagtctcttccatctctgaagaactcgaccccgagttct 13085470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 735 - 915
Target Start/End: Original strand, 8536655 - 8536839
Alignment:
Q  735 aaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccat----gttgactcatccaacgaaca 830  Q
    |||| ||||| |||||| ||| ||||||||||||||||||||| ||||||||||||| |||||| ||| ||| |||    |||||||| ||||| |||||    
T  8536655 aaaccctcctacatcagcctcttccacctctaaagaactcgactccgagttcttattctgataaaaagtttctcatatatgttgactcttccaatgaaca 8536754  T
Q  831 agagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 915  Q
    ||||| | ||||||||||||||||||||| |||||||||||||  || |||| |||| ||||| | |||||||||||||||||||    
T  8536755 agagatcaccctcctggatcccattgagtaaaatgcaaagatggtttcgtttaaaaactatagcagttgcctttatgccattgaa 8536839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 718 - 865
Target Start/End: Original strand, 365858 - 366008
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc---catgttg 814  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||||| |||||||||||| ||||||||  || ||||||  |||||||    ||||||    
T  365858 ctactaaattactaataaaatcctcctgcatcaatctcctccacctctgaagaactcgacctcgagttctcgttttgataaagagcttccatgtatgttg 365957  T
Q  815 actcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatg 865  Q
    |||| ||||| ||||| |||||| |||||| ||||||||||||||||||||    
T  365958 actcttccaatgaacaggagaccaccctccgggatcccattgagtgaaatg 366008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 718 - 787
Target Start/End: Original strand, 3064046 - 3064115
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 787  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  3064046 ctactaaattactaacaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttct 3064115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 931 - 996
Target Start/End: Complemental strand, 35724493 - 35724428
Alignment:
Q  931 cccattgtttaattgcatcccatatttgaagaccatcattgacaagaggatagtcttcaattatta 996  Q
    |||||||||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||    
T  35724493 cccattgtttaattgcatcccatattagaagaccatcattggcaaaagggtagtcttcaattatta 35724428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 931 - 992
Target Start/End: Complemental strand, 35708590 - 35708529
Alignment:
Q  931 cccattgtttaattgcatcccatatttgaagaccatcattgacaagaggatagtcttcaatt 992  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||| ||| ||||||||||||    
T  35708590 cccattgtttgattgcatcccatattagaagaccatcattggcaaaagggtagtcttcaatt 35708529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 931 - 992
Target Start/End: Original strand, 35726234 - 35726295
Alignment:
Q  931 cccattgtttaattgcatcccatatttgaagaccatcattgacaagaggatagtcttcaatt 992  Q
    |||||||||| ||||||||||||||  |||||||||||||| ||| ||| ||||||||||||    
T  35726234 cccattgtttgattgcatcccatatgagaagaccatcattggcaaaagggtagtcttcaatt 35726295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 718 - 759
Target Start/End: Original strand, 43304265 - 43304306
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcagtctcctcc 759  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  43304265 ctactaaattactaataaaaccctcctgcatcagtctcctcc 43304306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 718 - 798
Target Start/End: Original strand, 2472964 - 2473044
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataa 798  Q
    |||||||||||||||||||||  |  || |||||  |||||||| | ||||||||||||||||||||||| ||| ||||||    
T  2472964 ctactaaattactaataaaacctttgtgtatcagcttcctccacttttaaagaactcgaccccgagttctcattctgataa 2473044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 846 - 892
Target Start/End: Original strand, 43304322 - 43304368
Alignment:
Q  846 ggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatata 892  Q
    ||||||||||||||||||||| |||||   |||||||||||||||||    
T  43304322 ggatcccattgagtgaaatgccaagattgtttggtttgaaaaatata 43304368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 5e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 722 - 893
Target Start/End: Complemental strand, 18252246 - 18252071
Alignment:
Q  722 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgact 817  Q
    |||| ||||||  |||| |||||||||||| |||||| |||||| ||||||| ||||||||||||| ||||||||||  ||||| |    ||||| ||||    
T  18252246 taaaatactaaggaaaccctcctgcatcagcctcctctacctctgaagaacttgaccccgagttctcattatgataaacagctttccatgcatgtggact 18252147  T
Q  818 catccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatag 893  Q
    | ||||| | |||||||||| |||||||| |||||||| |||||||||||||||||  ||||||||||||||||||    
T  18252146 cctccaatggacaagagaccaccctcctgaatcccatttagtgaaatgcaaagatggtttggtttgaaaaatatag 18252071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 723 - 833
Target Start/End: Original strand, 21845202 - 21845316
Alignment:
Q  723 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactc 818  Q
    |||||||||| ||||| ||| |||||||||||  ||||||||| ||||||||||||||||||||| ||| ||||||  |||||||    |||||||||||    
T  21845202 aaattactaagaaaaccctcttgcatcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaagagcttcccatgcatgttgactc 21845301  T
Q  819 atccaacgaacaaga 833  Q
     ||||| ||||||||    
T  21845302 ctccaatgaacaaga 21845316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 746 - 787
Target Start/End: Original strand, 19677630 - 19677671
Alignment:
Q  746 catcagtctcctccacctctaaagaactcgaccccgagttct 787  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  19677630 catcagtctcctccacctctgaagaactcgaccccgagttct 19677671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 735 - 915
Target Start/End: Original strand, 280286 - 280469
Alignment:
Q  735 aaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttc----ccatgttgactcatccaacgaaca 830  Q
    ||||||| || |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||  ||||||     |||||||| || ||||| ||||     
T  280286 aaactcttctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcacatgcatgttgaatcctccaatgaac- 280384  T
Q  831 agagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 915  Q
    |||||||  ||| |||||||||||||||||||||||| |||||  ||| |||| ||||||||| | |||| ||||||||||||||    
T  280385 agagaccatccttctggatcccattgagtgaaatgcatagatggtttgatttggaaaatatagcagttgcttttatgccattgaa 280469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 718 - 807
Target Start/End: Original strand, 27952632 - 27952721
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc 807  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||  |||||||    
T  27952632 ctactaaattattaataaaaccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcc 27952721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 750 - 912
Target Start/End: Original strand, 32162254 - 32162419
Alignment:
Q  750 agtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgactcatccaacgaacaagagaccgccctcct 845  Q
    ||||||||||| |||| || ||||| |||  ||||||| ||| ||||||  |||||||||||    ||||||| || || |||||||||||| |||||||    
T  32162254 agtctcctccatctctgaaaaactcaaccttgagttctcattctgataaagagcttcccatgcatgttgactc-tctaatgaacaagagaccaccctcct 32162352  T
Q  846 ggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccatt 912  Q
     |||||||||||||||||||  ||||||  ||| |||| ||||||||||| ||||||||||||||||    
T  32162353 tgatcccattgagtgaaatgagaagatggtttgctttggaaaatatagtagttgcctttatgccatt 32162419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 718 - 856
Target Start/End: Complemental strand, 31636117 - 31635975
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgtt 813  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||  ||||||||| |||  |||||  || ||||    ||||||    
T  31636117 ctactaaattactaataaaaccctcctacatcagtctcctccacctctgaagaactcgaatccgagttctcatttagataaagagtttcccatgcatgtt 31636018  T
Q  814 gactcatccaacgaacaagagaccgccctcctggatcccattg 856  Q
    ||||| ||||| |||||||||  | ||| || |||||||||||    
T  31636017 gactcctccaatgaacaagagcacacccacccggatcccattg 31635975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 723 - 837
Target Start/End: Complemental strand, 35682031 - 35681913
Alignment:
Q  723 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactc 818  Q
    |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||  || ||||||  ||||| |    |||||||||||    
T  35682031 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccaagttctctttctgataaagagctttctatgcatgttgactc 35681932  T
Q  819 atccaacgaacaagagacc 837  Q
     | ||| ||||||||||||    
T  35681931 cttcaatgaacaagagacc 35681913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 723 - 787
Target Start/End: Complemental strand, 2165701 - 2165637
Alignment:
Q  723 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 787  Q
    ||||||||||  |||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  2165701 aaattactaaggaaactctcctacatcagtctcctccacctctgaagaactcgaccccgagttct 2165637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 746 - 871
Target Start/End: Complemental strand, 33053222 - 33053094
Alignment:
Q  746 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttc----ccatgttgactcatccaacgaacaagagaccgccc 841  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| | ||||  ||||||     ||||| ||||| || ||  ||||||||||| |||    
T  33053222 catcagtctcctccacctctgaagaactcgaccccg-gttcttattctaataaagagcttctcattcatgtcgactcctctaataaacaagagaccaccc 33053124  T
Q  842 tcctggatcccattgagtgaaatgcaaaga 871  Q
    ||||| ||||||||||||| ||||||||||    
T  33053123 tcctgaatcccattgagtggaatgcaaaga 33053094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 718 - 787
Target Start/End: Complemental strand, 22011214 - 22011145
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 787  Q
    |||||||||||   ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||    
T  22011214 ctactaaattaaagataaaaccctcctgcatcactctcctccacctctaaagaactcgaccctgagttct 22011145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 723 - 796
Target Start/End: Complemental strand, 23457461 - 23457389
Alignment:
Q  723 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgat 796  Q
    |||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||   |||||||||| ||| ||||    
T  23457461 aaattactaagaaaac-ctcctacatcagtcgcctccacctctgaagaactctgacccgagttctcattctgat 23457389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 5e-31; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 718 - 915
Target Start/End: Original strand, 13441896 - 13442095
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgtt 813  Q
    ||||||||||||||| ||||| || ||||||||||||||||||||||| ||||| ||||   | |||||| ||| ||||||  |||||||    ||||||    
T  13441896 ctactaaattactaacaaaacccttctgcatcagtctcctccacctctgaagaattcga--tcaagttctcattctgataaagagcttcccatgcatgtt 13441993  T
Q  814 gactcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattg 913  Q
    ||||| ||||| || ||||||| |  |||||||||||||||||||||||||||||||||   ||||||||||||||| |  | || ||||||| ||||||    
T  13441994 gactcctccaatgagcaagagatcatcctcctggatcccattgagtgaaatgcaaagatagtttggtttgaaaaataaaacagtttcctttataccattg 13442093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 718 - 915
Target Start/End: Complemental strand, 40805689 - 40805488
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttc----ccatgtt 813  Q
    |||| |||||| |||  ||||| |||| |||||||||||||||||| ||||||| |||||||||||||||| || ||||||| || |||     |||| |    
T  40805689 ctacaaaattaataaggaaactatcctacatcagtctcctccacctttaaagaagtcgaccccgagttcttgttctgataaggagtttcacatgcatgat 40805590  T
Q  814 gactcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattg 913  Q
    ||||| ||| | ||||||| || | |||||||| ||| |||||| |||||||||||||||| ||| |||| | ||||||| | ||| |||||| ||||||    
T  40805589 gactcctccgatgaacaagggatcaccctcctgaatctcattgaatgaaatgcaaagatgatttgatttggagaatatagcagttgtctttatcccattg 40805490  T
Q  914 aa 915  Q
    ||    
T  40805489 aa 40805488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 718 - 915
Target Start/End: Complemental strand, 31915370 - 31915167
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcagtctc---ctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc---ca-t 810  Q
    ||||||||||||||||||||| ||| ||||||||||||   |||||||||| |||||||| ||||||||||||  || | ||||||   ||||   || |    
T  31915370 ctactaaattactaataaaaccctcatgcatcagtctcctcctccacctctgaagaactcaaccccgagttctcgttctaataagagttttccattcatt 31915271  T
Q  811 gttgactcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgcca 910  Q
    |||||||| ||||| |||||||||| |  |||||||||||| ||||||||||||  |||||||  |||||||| ||||||| |   |||||||||| |||    
T  31915270 gttgactcctccaatgaacaagaga-ctacctcctggatccgattgagtgaaatctaaagatggtttggtttgtaaaatattgatgttgcctttatccca 31915172  T
Q  911 ttgaa 915  Q
    |||||    
T  31915171 ttgaa 31915167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 723 - 811
Target Start/End: Complemental strand, 10927022 - 10926933
Alignment:
Q  723 aaattactaataaaactc-tcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg 811  Q
    ||||||||||| ||| || |||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||  | |||||||||    
T  10927022 aaattactaatgaaaatcatcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagaacttcccatg 10926933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 810 - 892
Target Start/End: Complemental strand, 8220236 - 8220155
Alignment:
Q  810 tgttgactcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatata 892  Q
    ||||||||| ||||  |||||||||||  ||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||    
T  8220236 tgttgactcctccagtgaacaagagacgaccctcctggatcccattgagtgaaatgcatagatggc-tggtttgaataatata 8220155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 741 - 798
Target Start/End: Original strand, 8966030 - 8966087
Alignment:
Q  741 tcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataa 798  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||    
T  8966030 tcctacatcagtctcctccacctctgaagaactcgaccctgagttctcattctgataa 8966087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 723 - 857
Target Start/End: Complemental strand, 10927929 - 10927792
Alignment:
Q  723 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccat----gttgactc 818  Q
    ||||||||||  |||| ||||| || ||||||||||||| ||| ||||||||||||||||||||| ||| | ||||  || ||| |||    ||||||||    
T  10927929 aaattactaaggaaaccctcctacaacagtctcctccacttctgaagaactcgaccccgagttctcattctaataaagagtttctcatgcaagttgactc 10927830  T
Q  819 atccaacgaacaagagaccgccctcctggatcccattga 857  Q
     | |||  ||||||||||| ||||||| |||||||||||    
T  10927829 ttacaataaacaagagacc-ccctcctagatcccattga 10927792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 718 - 751
Target Start/End: Original strand, 50857751 - 50857784
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcag 751  Q
    ||||||||||||||||||||| ||||||||||||    
T  50857751 ctactaaattactaataaaaccctcctgcatcag 50857784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 63; Significance: 7e-27; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 735 - 906
Target Start/End: Complemental strand, 49127 - 48954
Alignment:
Q  735 aaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataaga-agcttcc---catgttgactcatccaacgaaca 830  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |||||| | | |||||   ||||||||||| ||| | |||||    
T  49127 aaactctcctacatcagtctcctccacctctgaagaactcaaccccgagttcttattctgataaaagaacttccatgcatgttgactcttcctatgaaca 49028  T
Q  831 agagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttat 906  Q
     |||| | ||| || ||||||||||||||||||| |||  | |  |||||||||||||||||| | ||||||||||    
T  49027 cgagaacacccacccggatcccattgagtgaaatacaa--aaggtttggtttgaaaaatatagcagttgcctttat 48954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 722 - 846
Target Start/End: Complemental strand, 10477 - 10349
Alignment:
Q  722 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgact 817  Q
    ||||||||||| ||||| ||||| |||||||||| ||||||||||| ||| | |||||| |||||| ||||||||||  |||||||||||    ||||||    
T  10477 taaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgaatattgact 10378  T
Q  818 catccaacgaacaagagaccgccctcctg 846  Q
    | ||||| |||||||||||  ||||||||    
T  10377 cctccaatgaacaagagacaaccctcctg 10349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 739 - 864
Target Start/End: Complemental strand, 37524 - 37396
Alignment:
Q  739 tctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataaga-agcttcc---catgttgactcatccaacgaacaagag 834  Q
    |||||| |||||||||||||||||||| |||||||||| ||| | |||||||| |||||| | |||||||   ||||||||||| ||| | ||||  |||    
T  37524 tctcctacatcagtctcctccacctctgaagaactcga-cccaaattcttattctgataaaagagcttccatgcatgttgactcttcctatgaaccggag 37426  T
Q  835 accgccctcctggatcccattgagtgaaat 864  Q
    | |||||  | |||||||||||||| ||||    
T  37425 aacgcccaaccggatcccattgagtaaaat 37396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 3e-26; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 718 - 914
Target Start/End: Original strand, 1217467 - 1217665
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc---catgttg 814  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||| | |||||||||| |||||||||   || ||||||  || || |   ||||| |    
T  1217467 ctactgaattactaataaaaccctcctgcatcagtctcctccacctttgaagaactcga-cccgagttcacgttttgataaagagatttcatgcatgtcg 1217565  T
Q  815 actcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattga 914  Q
      || |||||  ||||||||||| |||||||||||||||| || ||||||| ||||||    ||||||||||||||||| | |||||||||| |||||||    
T  1217566 tgtcctccaattaacaagagaccaccctcctggatcccatagaatgaaatgtaaagatagtctggtttgaaaaatatagcagttgcctttatcccattga 1217665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 718 - 811
Target Start/End: Complemental strand, 4303239 - 4303146
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg 811  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |||||||||| ||| ||||||  |||||||||||    
T  4303239 ctactaaattactaataaaaccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatg 4303146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 718 - 864
Target Start/End: Original strand, 13882990 - 13883141
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttccc------atg 811  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||| ||| | ||||  || ||| |      |||    
T  13882990 ctactaaattactaataaaaccctcctgcatcagtctcgtccacctctaaagaactcga-cccgagttctcattctaataaagagattctcatgcatatg 13883088  T
Q  812 ttgactcatccaacgaacaagagaccgccctcctggatcccattgagtgaaat 864  Q
    ||| ||| |||||  ||||||||||| ||||||||||||||||||| ||||||    
T  13883089 ttggctcctccaataaacaagagaccaccctcctggatcccattgaatgaaat 13883141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 722 - 873
Target Start/End: Original strand, 11001085 - 11001240
Alignment:
Q  722 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgact 817  Q
    |||| ||||||  |||| ||||| |||||||||||||||||||| |||||||||||||| | |||| ||| ||||||  |||||||    |||||| |||    
T  11001085 taaaatactaaggaaaccctcctacatcagtctcctccacctctgaagaactcgaccccaaattctcattgtgataaagagcttcccatgcatgttaact 11001184  T
Q  818 catccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatg 873  Q
    | ||||| ||| |||||| |  |||||||||||||||||||||||||| |||||||    
T  11001185 cctccaatgaaaaagagatcatcctcctggatcccattgagtgaaatgtaaagatg 11001240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 735 - 871
Target Start/End: Complemental strand, 1369629 - 1369488
Alignment:
Q  735 aaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttccc----atgttgactcatccaacgaac- 829  Q
    |||||||  ||||| |||||||||||||||| |||||||||| |||||||||||||| ||||||  ||||||||    |||||||||| ||||| ||||     
T  1369629 aaactcttgtgcatgagtctcctccacctctgaagaactcgagcccgagttcttattctgataaagagcttcccatgaatgttgactcctccaatgaaca 1369530  T
Q  830 aagagaccgccctcctggatcccattgagtgaaatgcaaaga 871  Q
    ||| |||| ||||||  ||||||||||| |||||| ||||||    
T  1369529 aagcgaccaccctccacgatcccattgaatgaaattcaaaga 1369488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 722 - 869
Target Start/End: Original strand, 8915432 - 8915582
Alignment:
Q  722 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc---catgttgactc 818  Q
    |||| ||||||  |||| ||||| ||||||||||||||| |||| ||||||| |||||||| |||| ||| | |||| ||||| ||   |||||||||||    
T  8915432 taaaatactaaggaaaccctcctacatcagtctcctccatctctgaagaactagaccccgaattctcattctaataaaaagctcccatgcatgttgactc 8915531  T
Q  819 atccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaa 869  Q
     ||| | ||||||||||||  ||| || ||| |||||| ||||||||||||    
T  8915532 ctccgatgaacaagagaccaaccttctagatgccattgggtgaaatgcaaa 8915582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 724 - 798
Target Start/End: Complemental strand, 1786500 - 1786426
Alignment:
Q  724 aattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataa 798  Q
    ||||||||| |||||  |||| ||| |||||||||||||||| |||||||||||| |||||||| ||| ||||||    
T  1786500 aattactaagaaaaccttcctacatgagtctcctccacctctgaagaactcgacctcgagttctcattttgataa 1786426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 851 - 915
Target Start/End: Original strand, 11001256 - 11001320
Alignment:
Q  851 ccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 915  Q
    ||||||||||||||| |||||||  ||| |||| ||||||||  | |||||||||||||||||||    
T  11001256 ccattgagtgaaatgtaaagatggtttgttttggaaaatataacagttgcctttatgccattgaa 11001320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 7e-24; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 722 - 856
Target Start/End: Complemental strand, 22873638 - 22873500
Alignment:
Q  722 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgact 817  Q
    ||||||| ||| ||||| ||||| |||||||||| ||||||||||| ||| |||| ||| |||||| ||||||||||  |||||||||||    ||||||    
T  22873638 taaattattaagaaaaccctcctacatcagtctcatccacctctaaggaaatcgatcccaagttctcattatgataaagagcttcccatgcatattgact 22873539  T
Q  818 catccaacgaacaagagaccgccctcctggatcccattg 856  Q
    | ||||| |||||||||||  ||||||||||||||||||    
T  22873538 cctccaatgaacaagagacaaccctcctggatcccattg 22873500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 722 - 846
Target Start/End: Complemental strand, 22889081 - 22888953
Alignment:
Q  722 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgact 817  Q
    ||||||||||| ||||| ||||| |||||||||| ||||||||||| ||| | |||||| |||||| ||||||||||  |||||||||||    ||||||    
T  22889081 taaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgcatattgact 22888982  T
Q  818 catccaacgaacaagagaccgccctcctg 846  Q
    | ||||| |||||||||||  ||||||||    
T  22888981 cctccaatgaacaagagacaaccctcctg 22888953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 722 - 846
Target Start/End: Complemental strand, 22910624 - 22910496
Alignment:
Q  722 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgact 817  Q
    ||||||||||| ||||| ||||| |||||||||| ||||||||||| ||| | |||||| |||||| ||||||||||  |||||||||||    ||||||    
T  22910624 taaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgtatattgact 22910525  T
Q  818 catccaacgaacaagagaccgccctcctg 846  Q
    | ||||| |||||||||||  ||||||||    
T  22910524 cctccaatgaacaagagacaaccctcctg 22910496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 750 - 890
Target Start/End: Original strand, 34374074 - 34374218
Alignment:
Q  750 agtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagagaccgccctcct 845  Q
    |||||||||||| ||| |||||||| |||||||||||| ||| ||||||  || ||||    ||||||||||| ||||| |||||||||||| | ||| |    
T  34374074 agtctcctccacatctgaagaactccaccccgagttctcattttgataaagagattcccatgcatgttgactcttccaatgaacaagagaccactctctt 34374173  T
Q  846 ggatcccattgagtgaaatgcaaagatgacttggtttgaaaaata 890  Q
    ||||||||||||||||| |||  |||||  ||| |||||||||||    
T  34374174 ggatcccattgagtgaattgcggagatggtttgatttgaaaaata 34374218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 735 - 872
Target Start/End: Complemental strand, 18203249 - 18203109
Alignment:
Q  735 aaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgactcatccaacgaaca 830  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||| ||||||| ||| | ||||  || || |||||    ||||||| || || |||||    
T  18203249 aaaccctcctacatcagtctcctccacctctgaagaactcgaccc-gagttctcattttaataaagagttttccatgcatgttgactcctcgaatgaaca 18203151  T
Q  831 agagaccgccctcctggatcccattgagtgaaatgcaaagat 872  Q
    ||||||| ||||||| ||||||||| |||||||||| |||||    
T  18203150 agagaccaccctcctagatcccattcagtgaaatgccaagat 18203109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 723 - 854
Target Start/End: Complemental strand, 12881849 - 12881715
Alignment:
Q  723 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactc 818  Q
    ||||||||||  |||| ||||| ||||||||||||||||||   ||||||||||||||||| ||| |||  |||||||| |||||    ||||||||||     
T  12881849 aaattactaaggaaaccctcctacatcagtctcctccacctaagaagaactcgaccccgagctctcattccgataagaa-cttcccatgcatgttgactt 12881751  T
Q  819 atccaacgaacaagagaccgccctcctggatcccat 854  Q
     | ||| |||||||||||| ||||||||||||||||    
T  12881750 cttcaatgaacaagagaccaccctcctggatcccat 12881715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 723 - 787
Target Start/End: Complemental strand, 3542024 - 3541960
Alignment:
Q  723 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 787  Q
    ||||||||||  || | ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  3542024 aaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttct 3541960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 723 - 787
Target Start/End: Complemental strand, 30049694 - 30049630
Alignment:
Q  723 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 787  Q
    ||||||||||  || | ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  30049694 aaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttct 30049630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 723 - 787
Target Start/End: Complemental strand, 30051981 - 30051917
Alignment:
Q  723 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 787  Q
    ||||||||||  || | ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  30051981 aaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttct 30051917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 718 - 765
Target Start/End: Complemental strand, 11194448 - 11194401
Alignment:
Q  718 ctactaaattactaataaaactctcctgcatcagtctcctccacctct 765  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  11194448 ctactaaattactaagaaaactctcctacatcagtctcctccacctct 11194401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 746 - 865
Target Start/End: Original strand, 12778692 - 12778813
Alignment:
Q  746 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagagaccgccc 841  Q
    |||||||||||||||||||| ||||||| |||||| | |||| ||| |||||   || ||||    ||||||||||| ||||| |||||||||||  |||    
T  12778692 catcagtctcctccacctctgaagaacttgaccccaaattctcattctgatag--agtttcctttgcatgttgactcctccaatgaacaagagacaaccc 12778789  T
Q  842 tcctggatcccattgagtgaaatg 865  Q
    || ||||||||||| |||||||||    
T  12778790 tcttggatcccattaagtgaaatg 12778813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 734 - 801
Target Start/End: Complemental strand, 32361173 - 32361106
Alignment:
Q  734 aaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaa 801  Q
    ||||| ||||| ||| ||||| ||||||||||||| ||||||||| |||||||| |||||||||||||    
T  32361173 aaaaccctcctacattagtcttctccacctctaaaaaactcgacctcgagttctcattatgataagaa 32361106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 839 - 915
Target Start/End: Original strand, 8047760 - 8047836
Alignment:
Q  839 ccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 915  Q
    ||||||| ||||||||||||| ||||| |||||||  ||  |||||||||||||| |||| || |||||||| ||||    
T  8047760 ccctcctcgatcccattgagtaaaatgtaaagatggtttaatttgaaaaatatagcaatttccattatgccagtgaa 8047836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 744 - 787
Target Start/End: Original strand, 8047661 - 8047704
Alignment:
Q  744 tgcatcagtctcctccacctctaaagaactcgaccccgagttct 787  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||    
T  8047661 tgcatcggtctcctccacctctgaagaacttgaccccgagttct 8047704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 749 - 798
Target Start/End: Complemental strand, 18720069 - 18720020
Alignment:
Q  749 cagtctcctccacctctaaagaactcgaccccgagttcttattatgataa 798  Q
    ||||||||||||||| | |||||||||||||||| |||| ||| ||||||    
T  18720069 cagtctcctccacctttgaagaactcgaccccgaattctaattttgataa 18720020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 826 - 915
Target Start/End: Original strand, 144274 - 144363
Alignment:
Q  826 gaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 915  Q
    |||||||||||  |||| |||||||||||||| |||||||||||||||  ||| |||||||||||||||| |||||||||| ||||||||    
T  144274 gaacaagagacgacccttctggatcccattgaatgaaatgcaaagatggtttgatttgaaaaatatagtagttgcctttatcccattgaa 144363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 727 - 912
Target Start/End: Complemental strand, 145555 - 145364
Alignment:
Q  727 tactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagct-tcc---ca-tgttgactcatc 821  Q
    |||||||||||| ||||| |||||||||||||||||||  ||||||| || |||||||| ||||| ||||||  || | |||   || ||||||||| |     
T  145555 tactaataaaaccctcctacatcagtctcctccacctcagaagaacttga-cccgagttattattctgataaagagttgtccgttcattgttgactcctt 145457  T
Q  822 caacgaacaagag--accgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccatt 912  Q
    ||| |||||||||  ||  | || |||||||||||||||| |||| |||| |||  ||| |||||||||||||| | |||||||||| |||||    
T  145456 caatgaacaagagacactactcttctggatcccattgagtaaaatacaaatatggtttgatttgaaaaatatagcagttgcctttatcccatt 145364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 723 - 787
Target Start/End: Original strand, 45928 - 45992
Alignment:
Q  723 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 787  Q
    ||||||||||  || | ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  45928 aaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttct 45992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 808 - 873
Target Start/End: Complemental strand, 15741 - 15676
Alignment:
Q  808 catgttgactcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatg 873  Q
    ||||||||||| ||||| ||||| |||||| ||||||  | ||||||||| ||||||| |||||||    
T  15741 catgttgactcctccaatgaacaggagaccaccctccaaggtcccattgaatgaaatgaaaagatg 15676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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