View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4736_low_11 (Length: 298)
Name: NF4736_low_11
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 91 - 279
Target Start/End: Original strand, 4001954 - 4002135
Alignment:
| Q |
91 |
atcaatggtaatgcaagttatttgggttaacatgtttttgagaaaggtgttgaaacttgaaggtagtggatgttaaaagattctttttcagaatttcatg |
190 |
Q |
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| T |
4001954 |
atcaatggtaacgcaagttatttgggttaacatgtttttgagaaagatgttga-------aggtagtggatgttaaaagattctttctcataatttcatg |
4002046 |
T |
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| Q |
191 |
gtttagagaaaaaagtatagttcttatgcctagacattatacagtttgtcaattctcatcacttgagtttatataatgaatcaggtttc |
279 |
Q |
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| T |
4002047 |
gtttagagaaaaaagtatggttcttatgcctagacattatacagtttgtcaattctcatcacttgagtttatataatgaatcaggtttc |
4002135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 271
Target Start/End: Original strand, 32724742 - 32724968
Alignment:
| Q |
40 |
agagagatgatgggtttacatgtttattagagaaagagtagnnnnnnnnnn--atcaatggtaatgcaagttatttgggttaacatgtttttgagaaagg |
137 |
Q |
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| T |
32724742 |
agagagattatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacataagttatttgggttaacaggctttttagaaagg |
32724841 |
T |
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| Q |
138 |
tgttgaaacttgaaggtagtggatgttaaaagattctttttcagaatttcatggtttagagaaaaaagtatagttcttatgcctagacattatacagttt |
237 |
Q |
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| T |
32724842 |
tgttgaa-------ggtaatggatgttaaaagattctttctcagcatttcatggttcagagaaaaaagtatggttcttatgtcaagacattatacgattt |
32724934 |
T |
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| Q |
238 |
gtcaattctcatcacttgagtttatataatgaat |
271 |
Q |
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| T |
32724935 |
gtgaattcgcatcacttgagtttataaaatgaat |
32724968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 271
Target Start/End: Original strand, 32723455 - 32723543
Alignment:
| Q |
183 |
atttcatggtttagagaaaaaagtatagttcttatgcctagacattatacagtttgtcaattctcatcacttgagtttatataatgaat |
271 |
Q |
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| T |
32723455 |
atttaatggtttagaggaaaaagtacagttctcatgcctagactttatacgatttcttaattctcatcacttgaatttataaaatgaat |
32723543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 32723353 - 32723452
Alignment:
| Q |
104 |
caagttatttgggtta--acatgtttttgagaaaggtgttgaaacttgaaggtagtggatgttaaaagattctttttcagaatttcatggtttagagaaa |
201 |
Q |
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| T |
32723353 |
caagttatttgagttataacatgtttttgagaaaggtgttga-------aggtagtggatgttacaagattctttatcagcatttcatggttcagatgaa |
32723445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 271
Target Start/End: Original strand, 15720181 - 15720269
Alignment:
| Q |
183 |
atttcatggtttagagaaaaaagtatagttcttatgcctagacattatacagtttgtcaattctcatcacttgagtttatataatgaat |
271 |
Q |
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| T |
15720181 |
atttaatggtttagaggaaaaagtacagttctcatgcctagactttatacaatttctgaattctcatcacttgaatttataaaatgaat |
15720269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 15720079 - 15720178
Alignment:
| Q |
104 |
caagttatttgggtta--acatgtttttgagaaaggtgttgaaacttgaaggtagtggatgttaaaagattctttttcagaatttcatggtttagagaaa |
201 |
Q |
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| T |
15720079 |
caagttatttgggttataacaagtttttgagaaaggtgttga-------aggtagtggatgttacaagattctttctcagtatttcatggttcagatgaa |
15720171 |
T |
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