View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4736_low_15 (Length: 250)
Name: NF4736_low_15
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736_low_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 1865214 - 1865452
Alignment:
| Q |
1 |
ctatcatgatgatgtgcaaacttcaaaaggcttgaatctaaaaaatattctacaaggtgtagattcaagtttatctaataataaaaatggtggatcatca |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1865214 |
ctatcatgttgatgtgcaaacttcaaaaggcttgaatctaaaaaatattctacatggtgtagattcaagtttatctaatactaaaaatggtggatcatca |
1865313 |
T |
|
| Q |
101 |
tccggtattattgatatgtcttttcatggagatatatcaaatgtgtcgacttataatactcaaaatacatacatgagtctacaacaaggaatcagt--tg |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
1865314 |
tccggtattattgatatgtcttttcatggagatatttcaaatgtgtcgacttataatactcaaaatacaaacatgagtctacaacaaggaatcagtgggg |
1865413 |
T |
|
| Q |
199 |
gggcaaacatatcaaaacctggatattcaagttcttctc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1865414 |
gggcaaacatatcaaaacctggatattcaagttcttctc |
1865452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 1865511 - 1865704
Alignment:
| Q |
46 |
tattctacaaggtgtagattcaagtttatctaataa---taaaaatggtggatcatcatccggtattattgatatgtcttttcatggagatatatcaaat |
142 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||||| ||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
1865511 |
tattctacatggtgtggattcaaatttatctaacgcgtttaataatggtgggtcatcatctggtattattgatatgtcttttcatggagatatttcaagt |
1865610 |
T |
|
| Q |
143 |
gtgtcgacttataatactcaaaatacatacatgagtctacaacaaggaatcagtt--ggggcaaacatatcaaaacctggatattcaagttcttctc |
237 |
Q |
| |
|
||| | ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1865611 |
gtgcc---ttataatactcaaaatacaaacatgagtctacaacaaggaatcagttggggggcaaacatatcaaaacctagatattcaagttcttctc |
1865704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University