View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4736_low_17 (Length: 245)
Name: NF4736_low_17
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 53538379 - 53538606
Alignment:
| Q |
1 |
ccatcatttgaacaacaattactgcaagtcactcgcaagcaaaagaatgatagtgagaggagaagcactgattataaagaatgatagtgctgattttcaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53538379 |
ccatcatatgaacaacaattactgcaagtcactcgcaagcaaaagaatgatagtgagaggagaagcactgattataaagaatgatagtgctgattttcaa |
53538478 |
T |
|
| Q |
101 |
tagtgagctctgccatctaattctaaccctcatcatatgattgttgaagcctttgatcaagtgaggacatggagcctacatggtcacctaaccttccttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53538479 |
tagtgagctctgccatctaattctaaccctcatcatatgattgttgaagcctttgatcaagtgaggacatggagcctacatggtcacctaaccttccttc |
53538578 |
T |
|
| Q |
201 |
tataattcattcaatcagctgctgtttg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
53538579 |
tataattcattcaatcagctgctgtttg |
53538606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University