View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4736_low_20 (Length: 224)
Name: NF4736_low_20
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 44721570 - 44721775
Alignment:
| Q |
1 |
aaatgtacaaaaggagttagcttgcactagaagttggcaagcctaatttggaatagggtatataatatgacccttcagttttaacgccaccctttattga |
100 |
Q |
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| T |
44721570 |
aaatgtacaaaaggagttagcttgcactagaagttggcaagcgtaatttggaatagggtatataatatgacccttcagttttaacgccaccctttattga |
44721669 |
T |
|
| Q |
101 |
ataaatgaatgcagccaggaagtaattaacttgagaaagttatcagatacttcagcaaaaacatgacgataaacggataaaactgaagcttacagaccag |
200 |
Q |
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| T |
44721670 |
ataaatgaatgcagccaggaagtaattaacttgagaaagttatcagatacttcagcaaaaacatgacgataaacggataaaactgaagcttacagaccag |
44721769 |
T |
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| Q |
201 |
taatgt |
206 |
Q |
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|||||| |
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| T |
44721770 |
taatgt |
44721775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38673206 - 38673267
Alignment:
| Q |
1 |
aaatgtacaaaaggagttagcttgcactagaagttggcaagcctaatttggaatagggtata |
62 |
Q |
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|||||||||||||||||||||||| ||||||| || |||| | ||||| ||||||||||||| |
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| T |
38673206 |
aaatgtacaaaaggagttagcttgtactagaactttgcaaacataattaggaatagggtata |
38673267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 38673359 - 38673411
Alignment:
| Q |
131 |
ttgagaaagttatcagatacttcagcaaaaacatgacgataaacggataaaac |
183 |
Q |
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||||||| ||||| ||| |||||||||||||| ||||||||||||||||||| |
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| T |
38673359 |
ttgagaacattatccgatgcttcagcaaaaacaagacgataaacggataaaac |
38673411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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