View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4736_low_22 (Length: 216)
Name: NF4736_low_22
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 3214958 - 3215145
Alignment:
| Q |
10 |
catcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctc |
109 |
Q |
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| T |
3214958 |
catcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctc |
3215057 |
T |
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| Q |
110 |
aacaacagagataactggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaatt |
197 |
Q |
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| T |
3215058 |
aacaacagagataactggactataaccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaatt |
3215145 |
T |
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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 32460471 - 32460635
Alignment:
| Q |
9 |
acatcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactct |
108 |
Q |
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| T |
32460471 |
acatcatcaatagtcttcttcttgaacttgtcaagacgagtctcatgagcaattaacagagactctacctcatcaatatcaatagtgtcaaatttgcttt |
32460570 |
T |
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| Q |
109 |
caacaacagagataactggactatatccatgtggtaaaccttccaaaataacatctaagtgctga |
173 |
Q |
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| T |
32460571 |
caacaactgaaatcactggactatactcttgtggtaaaccttctaaaattacatctaaatgctga |
32460635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 36399448 - 36399611
Alignment:
| Q |
27 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
126 |
Q |
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| T |
36399448 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacagatataacag |
36399547 |
T |
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| Q |
127 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatc |
190 |
Q |
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| T |
36399548 |
gactaaaatcttgcggtaaaccttctaaaatcacatccaaatgttgattaacaggaactggatc |
36399611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 52665850 - 52665923
Alignment:
| Q |
27 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaa |
100 |
Q |
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| T |
52665850 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaatgtcaataacatcaaa |
52665923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 24789296 - 24789452
Alignment:
| Q |
27 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
126 |
Q |
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|||||||| || |||||||| |||||||||| || || ||||| ||||| || || | ||||||||||||||| || || || || ||| | |||| | |
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| T |
24789296 |
ttcttgaatttatcaagacgtgtttcatgagtaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacaaatataatag |
24789395 |
T |
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| Q |
127 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaa |
183 |
Q |
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| T |
24789396 |
gactaaaatcttgtggtaaaccttctaaaatcacatccaaatgttgattaacaggaa |
24789452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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