View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4736_low_7 (Length: 453)
Name: NF4736_low_7
Description: NF4736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4736_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 244 - 434
Target Start/End: Original strand, 2744238 - 2744428
Alignment:
| Q |
244 |
atgagaattaataaatttctatatgacagggtttggtggcattatcattgacatcttacatcttcctattgaaacctaatggttgtgggtctaaagaatt |
343 |
Q |
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| T |
2744238 |
atgagaattaataaatttctatatgacagggtttggtggcattatcattgacatcttacatcttcctattgaaacctaatggttgtgggtctaaagaatt |
2744337 |
T |
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| Q |
344 |
accttgtggaacacattcatcatatgaaactactttattctatgtatccatttatctagtagccttaggaaatggaggatatcaacctacc |
434 |
Q |
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| T |
2744338 |
accttgtggaacacattcatcatatgaaactactttattctatgtatccatttatctagtagccttaggaaatggaggatatcaacctacc |
2744428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 2744199 - 2744241
Alignment:
| Q |
179 |
gttattcaattctacaaaatattgagataaacatatattatga |
221 |
Q |
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| T |
2744199 |
gttattcaattctacaaaatattgagataaacatatattatga |
2744241 |
T |
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