View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4737-Insertion-1 (Length: 984)
Name: NF4737-Insertion-1
Description: NF4737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4737-Insertion-1 |
 | |
|
| [»] scaffold0287 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 799; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 799; E-Value: 0
Query Start/End: Original strand, 8 - 977
Target Start/End: Original strand, 3619239 - 3620214
Alignment:
| Q |
8 |
gatattacatggtctgatgcttgatatcatatgttatggaaatactatttgtttcatgtaatatacttattgttttggtaagtttatttgtgtatcatct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3619239 |
gatattacatggtctgatgcttgatatcatatgttatggaaatactatttgtttcatgtaatatacttattgttttggtaagtttatttgtatatcatct |
3619338 |
T |
|
| Q |
108 |
tctacgtatcatatatatttatcagtaatgcatctaaaaacttaaatcacaagcaagcagacacggtgtttatatcaatctctgatacaaatattacata |
207 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3619339 |
tttatgtatcatatatatttatcagtaatgcatctaaaaacttaaatcacaagcaagcagacacggtgtttatatcaatctctgatacaaatattgcata |
3619438 |
T |
|
| Q |
208 |
aacccttatacataaagaaaaacaagcata--cctccacactgtaattacctacaacatcaatgtatagaacctagatta----agcaacttgcatacca |
301 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
3619439 |
aaccattatacataaagaaaaacaagcatatacctccacactgtaattacctacaacatcaatgtatagaatctagattaattaagcaacttgcatacca |
3619538 |
T |
|
| Q |
302 |
gcgtatactaaaaactgtcgattacgacatttacatgtgactcttggcaacaaggcaaaggtgattcttcttgtgtctagcaagtcctggcaatccttca |
401 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3619539 |
gcgtatactaaaaactgtcgattgcgacatttacatgtgattcttggcaacaaggcaaaggtgattcttcttgtgtctagcaagtcctggcaatccttca |
3619638 |
T |
|
| Q |
402 |
gtgtctatatcttcctttgtcataccttcaggcatttcccaatcaaaagagttaagaaggtttgcggttatcatttctactgtggcgattcctaatggta |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3619639 |
gtgtctatatcttcctttgtcataccttcaggcatttcccaatcaaaagagttaagaaggtttgcggttatcatttctactgtggcgattcctaatggta |
3619738 |
T |
|
| Q |
502 |
tgccagggcatattctacgccctgcaccgaatggaataaactcgaaattttgtcccttaaaatctatatcattatttaagaatctctctggataatactc |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
3619739 |
tgccagggcatattctacgccctgcaccgaatggaataaactcgaaattttgtcccttaaaatctatatcattgtttaagaatctctctggataaaactc |
3619838 |
T |
|
| Q |
602 |
gtcagggtctttccatgtctcagggtccctatgaatggcccaaatattcacaaacaccgacgtttttggttctattttatatccatttagaatgaaacct |
701 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||| | ||||||| |||||||||| || ||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
3619839 |
atcggggtctttccatgtctcggggtccctatgaatagaccaaatactcacaaacactgatgtttttggttctattttatatccatttagtgtgaaactt |
3619938 |
T |
|
| Q |
702 |
ttactggtctctcttggggctaggagtgctggtgaatagaatcttaatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcat |
801 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3619939 |
ttactggtctctctaggggctagtggtgctggtgaatagaatcttaatgtctcttttatcacagccttaaaatatacaaacttttgaatatcatcttcat |
3620038 |
T |
|
| Q |
802 |
ctatgaactcttttttgatgtttctaatttcttcttgagctttcttcattgctcttggattctttattaatcccggtcatcacccaaactgatgtggctg |
901 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3620039 |
ctatgaactcttttttgatgtttctaatttcttcttgagctttcttcattgctcttggattctttattaat-ccggtcatcacccaaactgatgtggctg |
3620137 |
T |
|
| Q |
902 |
ccacttgtgtcagtagctgcttacaagtagattctgtggatcattta----aaagcaaagcaaataattaggacattata |
977 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
3620138 |
-cacttgtgtcagtagctgc-tacaagtagattctgt-gatcattaaaagcaaagcaaagcaaataattaggacattata |
3620214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 327 - 939
Target Start/End: Original strand, 3629940 - 3630555
Alignment:
| Q |
327 |
gacatttacatgtgactcttggcaacaaggcaaaggtgattcttcttgtgtctagcaagtcctggcaatccttcagtgtctatatcttcctttgtcatac |
426 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| | |
|
|
| T |
3629940 |
gacatttacatgtgattcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcc |
3630039 |
T |
|
| Q |
427 |
cttcaggcatttcccaatcaaaagagttaagaaggtttgcggttatcatttctactgtggcgattcctaatggtatgccagggcatattctacgccctgc |
526 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||||||| |||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
3630040 |
cttcaggcgtttcccaatcaaatgaattaagaaggtttgcaattatcatttccaccgtggcgattcccaatggcatgccagggcaaattctacgccctgc |
3630139 |
T |
|
| Q |
527 |
accgaatggaataaactcgaaattttgtcccttaaaatctatatcattatttaagaatctctctggataatactcgtcagggtctttccatgtctcaggg |
626 |
Q |
| |
|
||| ||||| || ||||| |||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||||| || |||||||||| ||| ||| |
|
|
| T |
3630140 |
accaaatggtatcaactcaaaatcccgtcctttaaaatctatatcattgtttaagaatctctctggataaaactcgtcgggatctttccatgcctcgggg |
3630239 |
T |
|
| Q |
627 |
tccctatgaatggcccaaatattcacaaacaccgacgtttttggttctattttatatccatttagaatgaaacctttactggtctctcttggggctagga |
726 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3630240 |
tccctatgaatggcccaaatattcacaaacactgatgtttttggttctattttatgtccatttagaatgaaacttttactggtctctcttggggctagtg |
3630339 |
T |
|
| Q |
727 |
gtgctggtgaatagaatcttaatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaactcttttttg------at |
820 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3630340 |
gtgctggtgcatagaatcttaatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaactcttttttgccacatat |
3630439 |
T |
|
| Q |
821 |
gtttctaatttcttcttgagctttcttcattgctcttggattctttattaatcccggtcatcacccaaactgatgtggctgccacttgtgtcagtagctg |
920 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||| ||||||| |||||||||| | ||||||| ||||||| |
|
|
| T |
3630440 |
gtttctaatttcttcttgagctttcttcattgctcttggattcttcattaat-ccagtcatcgcccaaaccgatgtggctg-aagttgtgtcggtagctg |
3630537 |
T |
|
| Q |
921 |
cttacaagtagattctgtg |
939 |
Q |
| |
|
| |||||||| ||||||| |
|
|
| T |
3630538 |
c-gacaagtaggttctgtg |
3630555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 327 - 939
Target Start/End: Complemental strand, 16145 - 15530
Alignment:
| Q |
327 |
gacatttacatgtgactcttggcaacaaggcaaaggtgattcttcttgtgtctagcaagtcctggcaatccttcagtgtctatatcttcctttgtcatac |
426 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| | |
|
|
| T |
16145 |
gacatttacatgtgattcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcc |
16046 |
T |
|
| Q |
427 |
cttcaggcatttcccaatcaaaagagttaagaaggtttgcggttatcatttctactgtggcgattcctaatggtatgccagggcatattctacgccctgc |
526 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||||||| |||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
16045 |
cttcaggcgtttcccaatcaaatgaattaagaaggtttgcaattatcatttccaccgtggcgattcccaatggcatgccagggcaaattctacgccctgc |
15946 |
T |
|
| Q |
527 |
accgaatggaataaactcgaaattttgtcccttaaaatctatatcattatttaagaatctctctggataatactcgtcagggtctttccatgtctcaggg |
626 |
Q |
| |
|
||| ||||| || ||||| |||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||||| || |||||||||| ||| ||| |
|
|
| T |
15945 |
accaaatggtatcaactcaaaatcccgtcctttaaaatctatatcattgtttaagaatctctctggataaaactcgtcgggatctttccatgcctcgggg |
15846 |
T |
|
| Q |
627 |
tccctatgaatggcccaaatattcacaaacaccgacgtttttggttctattttatatccatttagaatgaaacctttactggtctctcttggggctagga |
726 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15845 |
tccctatgaatggcccaaatattcacaaacactgatgtttttggttctattttatgtccatttagaatgaaacttttactggtctctcttggggctagtg |
15746 |
T |
|
| Q |
727 |
gtgctggtgaatagaatcttaatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaactcttttttg------at |
820 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15745 |
gtgctggtgcatagaatcttaatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaactcttttttgccacatat |
15646 |
T |
|
| Q |
821 |
gtttctaatttcttcttgagctttcttcattgctcttggattctttattaatcccggtcatcacccaaactgatgtggctgccacttgtgtcagtagctg |
920 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||| ||||||| |||||||||| | ||||||| ||||||| |
|
|
| T |
15645 |
gtttctaatttcttcttgagctttcttcattgctcttggattcttcattaat-ccagtcatcgcccaaaccgatgtggctg-aagttgtgtcggtagctg |
15548 |
T |
|
| Q |
921 |
cttacaagtagattctgtg |
939 |
Q |
| |
|
| |||||||| ||||||| |
|
|
| T |
15547 |
c-gacaagtaggttctgtg |
15530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 741 - 817
Target Start/End: Complemental strand, 8979268 - 8979192
Alignment:
| Q |
741 |
aatcttaatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaactctttttt |
817 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| | |||||||||||||||||||||| || |||||||| |
|
|
| T |
8979268 |
aatcttaatgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatctttttt |
8979192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 466
Target Start/End: Original strand, 8900353 - 8900476
Alignment:
| Q |
343 |
tcttggcaacaaggcaaaggtgattcttcttgtgtctagcaagtcctggcaatccttcagtgtctatatcttcctttgtcataccttcaggcatttccca |
442 |
Q |
| |
|
||||||| |||||||||| | ||||||||||||| || ||||||||| | | |||||| || |||||||||||| |||||| || || | |||||| |
|
|
| T |
8900353 |
tcttggctgcaaggcaaagctcattcttcttgtgttgagtgagtcctggccacctttcagtatcaatatcttcctttaccataccatctggtaattccca |
8900452 |
T |
|
| Q |
443 |
atcaaaagagttaagaaggtttgc |
466 |
Q |
| |
|
|||||| |||| ||||| ||||| |
|
|
| T |
8900453 |
atcaaaggagtatagaagatttgc |
8900476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 618
Target Start/End: Original strand, 31071746 - 31071833
Alignment:
| Q |
531 |
aatggaataaactcgaaattttgtcccttaaaatctatatcattatttaagaatctctctggataatactcgtcagggtctttccatg |
618 |
Q |
| |
|
|||||||| | |||||||| |||||| || |||||||||||| || || |||||||||||||||| |||| || || || ||||||| |
|
|
| T |
31071746 |
aatggaatcagctcgaaatcttgtccttttaaatctatatcactacctatgaatctctctggataaaactcttctggatccttccatg |
31071833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University