View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4737-Insertion-12 (Length: 541)
Name: NF4737-Insertion-12
Description: NF4737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4737-Insertion-12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 7 - 541
Target Start/End: Original strand, 36025150 - 36025702
Alignment:
| Q |
7 |
aaaatatgtgacagagattgctgagattgacacacatggttcatatgcatgccgttggttaatgctaccaagtcgtgactaaggaaaatgagacaagcct |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36025150 |
aaaatatgtgacagagattgctgagattgacacacatggttcatatgcatgccgttggttaatcataccaagtcgtgactaaggaaaatgagacaagcct |
36025249 |
T |
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| Q |
107 |
acacacatgtcataaaagggtgatttcc-agcacgtttttcacacaatgaaacaattgtgtcttcagctgttcctaaatcaccacatggatagtaacaaa |
205 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36025250 |
acacacatgtcataaaagggtgatttcccagcacgtttttcacacaatgaaacaattgtgtcttcagctgttcctaaagcaccacatggatagtaacaaa |
36025349 |
T |
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| Q |
206 |
tccaccaccaatattttgacagaaggttttcctagcctagaattgtttt-----------------tggtggggattatctacctatgtattgtctactt |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
36025350 |
tccaccaccaatattttgacagaaggttttcctagcctagaattgctttcatctttgttgttttgttggtggggattatctacctatgtattgtctactt |
36025449 |
T |
|
| Q |
289 |
cttgagtgacattttctttatctctaactttcttaattatctaaataatttattttaaccatcaatttatcgacaagtttctcaggtttacttccctatc |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025450 |
cttgagtgacattttctttatctctaactttcttaattatctaaataatttattttaatcatcaatttatcgacaagtttctcaggtttacttccctatc |
36025549 |
T |
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| Q |
389 |
cttccgagtcttcgatcttaggcttctcaagctgcgttacagatgcacatgtcatcnnnnnnngccaagcttcatgtcattccccgaaggttgcgctaaa |
488 |
Q |
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| T |
36025550 |
tttccgggtcttcgatcttcggcttctcaagttgcgttacaggtgcacatgtcatctttttttgccaagcttcatgtcattccccaagggttgcgctaaa |
36025649 |
T |
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| Q |
489 |
gagttgaacttccaagttattatttgctacacagatttgctttagtgtgttca |
541 |
Q |
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| T |
36025650 |
gagttgaacttccaagttattatttgctgcatagatttgctttagtgtgttca |
36025702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 364
Target Start/End: Complemental strand, 46116234 - 46116198
Alignment:
| Q |
328 |
tctaaataatttattttaaccatcaatttatcgacaa |
364 |
Q |
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| T |
46116234 |
tctaaataatttattttaaccatcaatctatctacaa |
46116198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 364
Target Start/End: Complemental strand, 46129368 - 46129332
Alignment:
| Q |
328 |
tctaaataatttattttaaccatcaatttatcgacaa |
364 |
Q |
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||||||||||||||||||||||||||| |||| |||| |
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| T |
46129368 |
tctaaataatttattttaaccatcaatctatctacaa |
46129332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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