View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4737-Insertion-15 (Length: 397)

Name: NF4737-Insertion-15
Description: NF4737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4737-Insertion-15
NF4737-Insertion-15
[»] chr8 (9 HSPs)
chr8 (16-397)||(7493484-7493854)
chr8 (259-317)||(13634250-13634307)
chr8 (271-317)||(13734674-13734720)
chr8 (259-317)||(21138343-21138401)
chr8 (259-316)||(14402540-14402597)
chr8 (16-64)||(5095836-5095884)
chr8 (18-62)||(13407318-13407362)
chr8 (23-59)||(28414013-28414049)
chr8 (22-62)||(34952458-34952498)
[»] chr3 (11 HSPs)
chr3 (210-386)||(13585615-13585795)
chr3 (271-356)||(25984663-25984748)
chr3 (16-58)||(55283194-55283236)
chr3 (18-63)||(20493584-20493629)
chr3 (16-65)||(40631187-40631236)
chr3 (18-62)||(45515634-45515678)
chr3 (16-50)||(50661659-50661693)
chr3 (18-62)||(18722595-18722639)
chr3 (18-62)||(28529250-28529294)
chr3 (18-58)||(40716001-40716041)
chr3 (26-62)||(55452160-55452196)
[»] chr7 (8 HSPs)
chr7 (266-328)||(3761149-3761211)
chr7 (18-62)||(42863573-42863617)
chr7 (18-63)||(27949269-27949314)
chr7 (18-62)||(6442162-6442206)
chr7 (18-64)||(19422973-19423019)
chr7 (18-64)||(27888277-27888323)
chr7 (18-64)||(31502603-31502649)
chr7 (23-64)||(32205074-32205115)
[»] chr4 (6 HSPs)
chr4 (228-331)||(43719683-43719789)
chr4 (16-64)||(50571859-50571907)
chr4 (18-65)||(40991728-40991775)
chr4 (18-64)||(53871002-53871048)
chr4 (259-331)||(9744786-9744858)
chr4 (16-64)||(39016803-39016851)
[»] chr1 (6 HSPs)
chr1 (16-64)||(25543335-25543383)
chr1 (225-331)||(18312871-18312980)
chr1 (22-62)||(26980405-26980445)
chr1 (18-64)||(44739113-44739159)
chr1 (18-63)||(10659908-10659953)
chr1 (18-62)||(32848722-32848766)
[»] scaffold0148 (1 HSPs)
scaffold0148 (259-317)||(33931-33989)
[»] chr2 (5 HSPs)
chr2 (18-64)||(10981513-10981559)
chr2 (262-331)||(16056327-16056395)
chr2 (18-65)||(44274375-44274422)
chr2 (25-62)||(32856285-32856322)
chr2 (18-62)||(15508911-15508955)
[»] chr6 (1 HSPs)
chr6 (275-331)||(21863537-21863593)
[»] chr5 (3 HSPs)
chr5 (20-63)||(28611919-28611962)
chr5 (259-317)||(15674336-15674394)
chr5 (18-62)||(17537241-17537285)
[»] scaffold0363 (1 HSPs)
scaffold0363 (259-316)||(16256-16313)


Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 7493484 - 7493854
Alignment:
Q  16 taagtgttagagagagtgtttaaaagtgagtgttgttaacattcctcttgcagttaaatgtttgttcgttggttggcaacggctattaactaccgttccc 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7493484 taagtgttagagagagtgtttaaaagtgagtattgttaacattcctcttgcagttaaatgtttgttcgttggttggcaacggctgttaactaccgttccc 7493583  T
Q  116 gacatattttcacgtataaggcaatatacttccactgttccacatcactattcattcaccaactcnnnnnnnnctctcttccatacgaaaatccccaaat 215  Q
    ||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||         ||||||||||||| |||||||||||||    
T  7493584 gacatattttcacatataaggcaatatacttccac--------atcactattcattcaccaact---ttttttctctcttccatacaaaaatccccaaat 7493672  T
Q  216 tttgaattctttttgaaaaatcatggtctcaaatcatttaagaattgctaaaagatttctacactcatttaacgtcaagaaacgtgtaatgcatctttta 315  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7493673 tttgaattctttttgcaaaatcttggtctcaaatcatttaagaattgctaaaagatttctacactcatttaacgtcaagaaacgtgtaatgcatctttta 7493772  T
Q  316 acacatttacattgttactttattctgccatattttcgtaaaaacctgacatgatcgtaacgacacttaaccatcgctcgag 397  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7493773 acacatttacattgttcctttattctgccatattttcgtaaaaacctgacatgatcgtaacgacacttaaccatcgctcgag 7493854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 13634250 - 13634307
Alignment:
Q  259 attgctaaaagatttctacactcatttaacgtcaagaaacgtgtaatgcatcttttaac 317  Q
    ||||||||||| ||||||||||||||| | |||||||||  ||||||||||||||||||    
T  13634250 attgctaaaag-tttctacactcatttgatgtcaagaaatatgtaatgcatcttttaac 13634307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 13734674 - 13734720
Alignment:
Q  271 tttctacactcatttaacgtcaagaaacgtgtaatgcatcttttaac 317  Q
    ||||||||||||||| | |||||||||  ||||||||||||||||||    
T  13734674 tttctacactcatttgatgtcaagaaatatgtaatgcatcttttaac 13734720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 21138343 - 21138401
Alignment:
Q  259 attgctaaaagatttctacactcatttaacgtcaagaaacgtgtaatgcatcttttaac 317  Q
    ||||||| ||| ||||||||| ||||| || |||||||||  |||||||||||||||||    
T  21138343 attgctagaaggtttctacacacatttgacatcaagaaacaagtaatgcatcttttaac 21138401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 14402597 - 14402540
Alignment:
Q  259 attgctaaaagatttctacactcatttaacgtcaagaaacgtgtaatgcatcttttaa 316  Q
    ||||||| | ||||||||||| ||||| |||||||||||| |||| || |||||||||    
T  14402597 attgctagatgatttctacacacatttgacgtcaagaaacatgtagtgtatcttttaa 14402540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 5095836 - 5095884
Alignment:
Q  16 taagtgttagagagagtgtttaaaagtgagtgttgttaacattcctctt 64  Q
    |||||||| || |||||||| |||||| ||||||| |||||||||||||    
T  5095836 taagtgttcgaaagagtgttgaaaagtaagtgttgctaacattcctctt 5095884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 13407362 - 13407318
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctc 62  Q
    |||||||||||||||||| ||||| |||||||| || ||||||||    
T  13407362 agtgttagagagagtgttcaaaagagagtgttgctagcattcctc 13407318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 28414013 - 28414049
Alignment:
Q  23 tagagagagtgtttaaaagtgagtgttgttaacattc 59  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  28414013 tagagagagtgttgaaaagtgagtgttgttagcattc 28414049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 34952498 - 34952458
Alignment:
Q  22 ttagagagagtgtttaaaagtgagtgttgttaacattcctc 62  Q
    |||||||||||||| |||||||||||||| || ||||||||    
T  34952498 ttagagagagtgttaaaaagtgagtgttgctagcattcctc 34952458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 386
Target Start/End: Original strand, 13585615 - 13585795
Alignment:
Q  210 ccaaattttgaattcttt-ttgaaaaatcatggtctcaaatcatttaagaat---tgctaaaagatttctacactcatttaacgtcaagaaacgtgtaat 305  Q
    ||||||||||||||  || ||| ||||||||||||||| |||||| ||  ||   || || ||| ||| ||||||||||| ||||||||||| |||||||    
T  13585615 ccaaattttgaatttattgttgtaaaatcatggtctcacatcattgaaatatgattgttagaaggtttatacactcatttgacgtcaagaaatgtgtaat 13585714  T
Q  306 gcatcttttaacacatttacattgttactttattctgccatattttcgtaaaaacctgacatgatcgtaacgacacttaac 386  Q
    | ||||| |||| |||||| |||||    || ||||| |||||||||| |||||  ||||||||| |||| ||||||||||    
T  13585715 gtatcttctaacccatttatattgtgcaatttttctgtcatattttcgcaaaaatatgacatgattgtaatgacacttaac 13585795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 356
Target Start/End: Original strand, 25984663 - 25984748
Alignment:
Q  271 tttctacactcatttaacgtcaagaaacgtgtaatgcatcttttaacacatttacattgttactttattctgccatattttcgtaa 356  Q
    ||||||||| ||||| ||||||||||||| |||||||||  ||||||   |||||||||||  ||| |||||||||||||||||||    
T  25984663 tttctacacacatttgacgtcaagaaacgggtaatgcattatttaacctgtttacattgtttgttttttctgccatattttcgtaa 25984748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 55283194 - 55283236
Alignment:
Q  16 taagtgttagagagagtgtttaaaagtgagtgttgttaacatt 58  Q
    ||||||||| |||||||||||||||||||||||||||| ||||    
T  55283194 taagtgttaaagagagtgtttaaaagtgagtgttgttagcatt 55283236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 20493584 - 20493629
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctct 63  Q
    |||||||||||||||||| |||||||||||||| || |||||||||    
T  20493584 agtgttagagagagtgttgaaaagtgagtgttgctagcattcctct 20493629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 40631236 - 40631187
Alignment:
Q  16 taagtgttagagagagtgtttaaaagtgagtgttgttaacattcctcttg 65  Q
    |||||||||||||| ||||| ||||||||||||||||| |||| ||||||    
T  40631236 taagtgttagagagtgtgttgaaaagtgagtgttgttagcattactcttg 40631187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 45515634 - 45515678
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctc 62  Q
    |||||| ||||||||||| ||||||||| ||||||||||||||||    
T  45515634 agtgttggagagagtgttaaaaagtgagcgttgttaacattcctc 45515678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 50661659 - 50661693
Alignment:
Q  16 taagtgttagagagagtgtttaaaagtgagtgttg 50  Q
    |||||||||||||||||||||||||| ||||||||    
T  50661659 taagtgttagagagagtgtttaaaagagagtgttg 50661693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 18722595 - 18722639
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctc 62  Q
    |||| ||||||||||||  ||||||||||||||||| ||||||||    
T  18722595 agtgctagagagagtgtagaaaagtgagtgttgttagcattcctc 18722639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 28529294 - 28529250
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctc 62  Q
    |||| ||||||||||||| |||||||||||||| || ||||||||    
T  28529294 agtgctagagagagtgttgaaaagtgagtgttgctagcattcctc 28529250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 40716001 - 40716041
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacatt 58  Q
    |||| ||||||||||||| |||||||||||||| |||||||    
T  40716001 agtgctagagagagtgttgaaaagtgagtgttgctaacatt 40716041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 55452160 - 55452196
Alignment:
Q  26 agagagtgtttaaaagtgagtgttgttaacattcctc 62  Q
    |||||||||| |||||||||||||| |||||||||||    
T  55452160 agagagtgttcaaaagtgagtgttgctaacattcctc 55452196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 3761149 - 3761211
Alignment:
Q  266 aaagatttctacactcatttaacgtcaagaaacgtgtaatgcatcttttaacacatttacatt 328  Q
    |||||||||||||| ||||| ||||||||||||  ||||||||||||||||||| ||||||||    
T  3761149 aaagatttctacacacatttgacgtcaagaaacaggtaatgcatcttttaacacgtttacatt 3761211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 42863573 - 42863617
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctc 62  Q
    ||||||||||||||||||||||||||||||||| || ||||||||    
T  42863573 agtgttagagagagtgtttaaaagtgagtgttgctagcattcctc 42863617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 27949314 - 27949269
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctct 63  Q
    |||||||||||||||||| ||||||||||||||||| | |||||||    
T  27949314 agtgttagagagagtgttaaaaagtgagtgttgttagctttcctct 27949269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 6442206 - 6442162
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctc 62  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||    
T  6442206 agtgatagagagagtgttgaaaaatgagtgttgttaacattcctc 6442162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 19422973 - 19423019
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctctt 64  Q
    |||| ||||||||||||| |||||||||||||| |||||||| ||||    
T  19422973 agtgatagagagagtgttgaaaagtgagtgttgctaacattcttctt 19423019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 27888323 - 27888277
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctctt 64  Q
    |||||||||||||||| | |||||||||||||| || ||||||||||    
T  27888323 agtgttagagagagtgctcaaaagtgagtgttgctagcattcctctt 27888277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 31502603 - 31502649
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctctt 64  Q
    ||||||||||||| |||| |||||||||||||| || ||||||||||    
T  31502603 agtgttagagagactgttgaaaagtgagtgttgctagcattcctctt 31502649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 32205115 - 32205074
Alignment:
Q  23 tagagagagtgtttaaaagtgagtgttgttaacattcctctt 64  Q
    ||||||||||||| |||||||||||||| || ||||||||||    
T  32205115 tagagagagtgttcaaaagtgagtgttgctagcattcctctt 32205074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 331
Target Start/End: Complemental strand, 43719789 - 43719683
Alignment:
Q  228 ttgaaaaatcatggtctcaaatcatttaagaa---ttgctaaaagatttctacactcatttaacgtcaagaaacgtgtaatgcatcttttaacacattta 324  Q
    |||||||||| | ||||||||||||| |||||   ||| || |||||||||||| |||| ||||||||| |||  | |||||||||||||||| | ||||    
T  43719789 ttgaaaaatcctagtctcaaatcattgaagaaggattgttagaagatttctacattcatctaacgtcaacaaatatataatgcatcttttaacccgttta 43719690  T
Q  325 cattgtt 331  Q
    |||||||    
T  43719689 cattgtt 43719683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 50571907 - 50571859
Alignment:
Q  16 taagtgttagagagagtgtttaaaagtgagtgttgttaacattcctctt 64  Q
    |||||| ||||||||||||| |||||||| ||||| |||||||||||||    
T  50571907 taagtgctagagagagtgttgaaaagtgactgttgctaacattcctctt 50571859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 40991728 - 40991775
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctcttg 65  Q
    |||| ||||||||||||| |||||||||||||| || |||||||||||    
T  40991728 agtgatagagagagtgttgaaaagtgagtgttgctagcattcctcttg 40991775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 53871002 - 53871048
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctctt 64  Q
    ||||||||||||||||||  ||||||||||||| || ||||||||||    
T  53871002 agtgttagagagagtgttggaaagtgagtgttgctagcattcctctt 53871048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 9744786 - 9744858
Alignment:
Q  259 attgctaaaagatttctacactcatttaacgtcaagaaacgtgtaatgcatcttttaacacatttacattgtt 331  Q
    ||||||| || |||||||||||||||||||||||| |||| |||| | |||  |||||  | |||||||||||    
T  9744786 attgctagaatatttctacactcatttaacgtcaataaacatgtattccatactttaatccgtttacattgtt 9744858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 39016803 - 39016851
Alignment:
Q  16 taagtgttagagagagtgtttaaaagtgagtgttgttaacattcctctt 64  Q
    |||||| ||||||||||||| ||||| |||||||| ||||||| |||||    
T  39016803 taagtgctagagagagtgttcaaaagagagtgttgctaacatttctctt 39016851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 25543383 - 25543335
Alignment:
Q  16 taagtgttagagagagtgtttaaaagtgagtgttgttaacattcctctt 64  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||    
T  25543383 taagtgttagagagagtgtttaaaagtgagtgttgctagcattcctctt 25543335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 331
Target Start/End: Complemental strand, 18312980 - 18312871
Alignment:
Q  225 tttttgaaaaatcatggtctcaaatcatttaagaa---ttgctaaaagatttctacactcatttaacgtcaagaaacgtgtaatgcatcttttaacacat 321  Q
    |||||| |||||| ||||||||||| ||| |||||   |||||| ||| ||||||||  |||| ||||||||  ||| ||||||| || |||||||||||    
T  18312980 tttttgcaaaatcttggtctcaaattattgaagaaggattgctagaaggtttctacatacattgaacgtcaaacaacatgtaatgaatgttttaacacat 18312881  T
Q  322 ttacattgtt 331  Q
    ||||||||||    
T  18312880 ttacattgtt 18312871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 26980405 - 26980445
Alignment:
Q  22 ttagagagagtgtttaaaagtgagtgttgttaacattcctc 62  Q
    |||||||||||||| ||||||||||||||||| ||||||||    
T  26980405 ttagagagagtgttgaaaagtgagtgttgttagcattcctc 26980445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 44739159 - 44739113
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctctt 64  Q
    |||| ||||||||||||| ||||| |||||||| |||||||||||||    
T  44739159 agtgctagagagagtgttcaaaagagagtgttgctaacattcctctt 44739113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 10659908 - 10659953
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctct 63  Q
    ||||||||||||||| || |||||||||||||| ||||||| ||||    
T  10659908 agtgttagagagagtattgaaaagtgagtgttgctaacattactct 10659953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 32848722 - 32848766
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctc 62  Q
    |||| ||||||||||||| ||||| ||||||||||| ||||||||    
T  32848722 agtgctagagagagtgttcaaaagagagtgttgttagcattcctc 32848766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 33931 - 33989
Alignment:
Q  259 attgctaaaagatttctacactcatttaacgtcaagaaacgtgtaatgcatcttttaac 317  Q
    |||| |||||| ||||||||| ||||| ||||||||||||  |||||||||||||||||    
T  33931 attgttaaaaggtttctacacacatttgacgtcaagaaacaggtaatgcatcttttaac 33989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 10981559 - 10981513
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctctt 64  Q
    |||||||||||||||||| |||||||||| |||||| ||||||||||    
T  10981559 agtgttagagagagtgttcaaaagtgagttttgttatcattcctctt 10981513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 331
Target Start/End: Complemental strand, 16056395 - 16056327
Alignment:
Q  262 gctaaaagatttctacactcatttaacgtcaagaaacgtgtaatgcatcttttaacacatttacattgtt 331  Q
    |||||||| |||||||||||||| |||||||||||  | ||| ||||||||||||| | |||||||||||    
T  16056395 gctaaaaggtttctacactcattaaacgtcaagaatag-gtattgcatcttttaactcgtttacattgtt 16056327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 44274375 - 44274422
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctcttg 65  Q
    ||||||||||||| | |||||||| ||||||||||| |||||||||||    
T  44274375 agtgttagagagaatatttaaaagagagtgttgttagcattcctcttg 44274422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 32856285 - 32856322
Alignment:
Q  25 gagagagtgtttaaaagtgagtgttgttaacattcctc 62  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  32856285 gagagagtgttcaaaagtgagtgttgttagcattcctc 32856322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 15508955 - 15508911
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctc 62  Q
    ||||||||| |||||||| ||||| |||||||| |||||||||||    
T  15508955 agtgttagaaagagtgttcaaaagagagtgttgctaacattcctc 15508911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 21863593 - 21863537
Alignment:
Q  275 tacactcatttaacgtcaagaaacgtgtaatgcatcttttaacacatttacattgtt 331  Q
    |||||||||  |||||||| |||| ||||||||||||| |||| |||||||||||||    
T  21863593 tacactcatcaaacgtcaacaaacatgtaatgcatcttctaacccatttacattgtt 21863537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 28611919 - 28611962
Alignment:
Q  20 tgttagagagagtgtttaaaagtgagtgttgttaacattcctct 63  Q
    |||||||||||||| | ||||||||||||||||| |||||||||    
T  28611919 tgttagagagagtgctcaaaagtgagtgttgttagcattcctct 28611962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 15674394 - 15674336
Alignment:
Q  259 attgctaaaagatttctacactcatttaacgtcaagaaacgtgtaatgcatcttttaac 317  Q
    ||||||| || ||||||||||||||||  |||||||||||  |||||| ||||||||||    
T  15674394 attgctagaaaatttctacactcatttggcgtcaagaaacaggtaatgtatcttttaac 15674336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 17537241 - 17537285
Alignment:
Q  18 agtgttagagagagtgtttaaaagtgagtgttgttaacattcctc 62  Q
    |||| ||||||||||||| |||||||||| |||||| ||||||||    
T  17537241 agtgatagagagagtgttgaaaagtgagtattgttatcattcctc 17537285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 16256 - 16313
Alignment:
Q  259 attgctaaaagatttctacactcatttaacgtcaagaaacgtgtaatgcatcttttaa 316  Q
    ||||||| | ||||||||||| ||||| |||||||||||| |||| || |||||||||    
T  16256 attgctagatgatttctacacacatttgacgtcaagaaacatgtagtgtatcttttaa 16313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University