View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4737-Insertion-19 (Length: 233)

Name: NF4737-Insertion-19
Description: NF4737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4737-Insertion-19
NF4737-Insertion-19
[»] chr7 (6 HSPs)
chr7 (37-233)||(32943016-32943212)
chr7 (37-233)||(32950197-32950393)
chr7 (138-233)||(32927272-32927367)
chr7 (135-233)||(32935534-32935632)
chr7 (130-233)||(32924530-32924633)
chr7 (128-233)||(32912557-32912662)
[»] chr4 (1 HSPs)
chr4 (130-233)||(11824871-11824974)


Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 37 - 233
Target Start/End: Complemental strand, 32943212 - 32943016
Alignment:
Q  37 tcaaatgagtgaatgtcatgaaatccgacatgaaatcctcgatacatacccctgtaggcacgtaataaaatgatgatgtaacataaagagttttctgccc 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32943212 tcaaatgagtgaatgtcatgaaatccgacatgaaatcctcgatacatacccctgtaggcacgtaataaaatgatgatgtaacataaagagttttctgccc 32943113  T
Q  137 acttcctcctccaccgttccatatcccaccaaaagtacatttcccataaggacatggatcattcactttaagtgccttaagaattatctctttgcat 233  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32943112 acttcctcctccaccgttccatatcccaccaaaactacatttcccataaggacatggatcattcactttaagtgccttaagaattatctctttgcat 32943016  T

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Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 37 - 233
Target Start/End: Complemental strand, 32950393 - 32950197
Alignment:
Q  37 tcaaatgagtgaatgtcatgaaatccgacatgaaatcctcgatacatacccctgtaggcacgtaataaaatgatgatgtaacataaagagttttctgccc 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32950393 tcaaatgagtgaatgtcatgaaatccgacatgaaatcctcgatacatacccctgtaggcacgtaataaaatgatgatgtaacataaagagttttctgccc 32950294  T
Q  137 acttcctcctccaccgttccatatcccaccaaaagtacatttcccataaggacatggatcattcactttaagtgccttaagaattatctctttgcat 233  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32950293 acttcctcctccaccgttccatatcccaccaaaactacattttccataaggacatggatcattcactttaagtgccttaagaattatctctttgcat 32950197  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 32927367 - 32927272
Alignment:
Q  138 cttcctcctccaccgttccatatcccaccaaaagtacatttcccataaggacatggatcattcactttaagtgccttaagaattatctctttgcat 233  Q
    |||||||||||||| |||||||||||||||||||| || |||  ||| |||||||||||||||||||||||  |||||||| ||||||||||||||    
T  32927367 cttcctcctccaccattccatatcccaccaaaagtgcaattcgaatagggacatggatcattcactttaagaaccttaagagttatctctttgcat 32927272  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 32935632 - 32935534
Alignment:
Q  135 ccacttcctcctccaccgttccatatcccaccaaaagtacatttcccataaggacatggatcattcactttaagtgccttaagaattatctctttgcat 233  Q
    ||||| ||||||||||| |||||||| ||||  ||||| ||  ||  ||| |||||||||||||||||||||||  |||||||||||||||||||||||    
T  32935632 ccactccctcctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaaccttaagaattatctctttgcat 32935534  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 32924633 - 32924530
Alignment:
Q  130 tctgcccacttcctcctccaccgttccatatcccaccaaaagtacatttcccataaggacatggatcattcactttaagtgccttaagaattatctcttt 229  Q
    |||| |||||||||||||||||  |||| || ||||||||||| || |||  ||| |||||||||| ||||| |||||| |||| | ||| ||||| |||    
T  32924633 tctgtccacttcctcctccaccactccaaattccaccaaaagtgcaattctgatagggacatggataattcaatttaagagcctcacgaactatcttttt 32924534  T
Q  230 gcat 233  Q
    ||||    
T  32924533 gcat 32924530  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 32912662 - 32912557
Alignment:
Q  128 tttctgcccacttcctcctccaccgttccatatcccaccaaaagtacatttcccataaggacatggatcattcactttaagtgccttaagaattatctct 227  Q
    |||||| ||| |||| ||||| || ||||| || ||||||||||| || ||   ||| ||||||||||  |||| ||||||||||||| ||||||||| |    
T  32912662 tttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatcttt 32912563  T
Q  228 ttgcat 233  Q
    ||||||    
T  32912562 ttgcat 32912557  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 11824974 - 11824871
Alignment:
Q  130 tctgcccacttcctcctccaccgttccatatcccaccaaaagtacatttcccataaggacatggatcattcactttaagtgccttaagaattatctcttt 229  Q
    |||| ||||||||||||||||| ||||| || ||||||||||| || |||  |||||||||||||| ||||| |||||| |||| | ||| ||||| |||    
T  11824974 tctgtccacttcctcctccaccattccaaattccaccaaaagtgcaattctgataaggacatggataattcaatttaagagcctgatgaactatcttttt 11824875  T
Q  230 gcat 233  Q
    ||||    
T  11824874 gcat 11824871  T

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