View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4737-Insertion-2 (Length: 951)

Name: NF4737-Insertion-2
Description: NF4737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4737-Insertion-2
NF4737-Insertion-2
[»] chr3 (9 HSPs)
chr3 (191-951)||(28762924-28763677)
chr3 (579-696)||(36260993-36261113)
chr3 (64-170)||(28763700-28763792)
chr3 (579-693)||(47731176-47731293)
chr3 (629-694)||(33282879-33282944)
chr3 (624-691)||(16194121-16194188)
chr3 (624-691)||(29306393-29306460)
chr3 (642-691)||(42339939-42339988)
chr3 (624-689)||(18680661-18680726)
[»] chr4 (10 HSPs)
chr4 (625-692)||(26644835-26644902)
chr4 (625-696)||(24195080-24195151)
chr4 (579-672)||(48546754-48546850)
chr4 (625-688)||(10402229-10402292)
chr4 (642-696)||(3161441-3161495)
chr4 (548-582)||(44454610-44454644)
chr4 (642-692)||(56094182-56094232)
chr4 (624-689)||(5750623-5750688)
chr4 (632-693)||(7556085-7556146)
chr4 (639-680)||(26003921-26003962)
[»] chr2 (9 HSPs)
chr2 (602-698)||(931132-931229)
chr2 (639-696)||(9158619-9158676)
chr2 (624-691)||(9298647-9298714)
chr2 (640-693)||(11862436-11862489)
chr2 (625-693)||(37817779-37817848)
chr2 (624-692)||(21436933-21437001)
chr2 (625-685)||(21508825-21508885)
chr2 (648-691)||(10221734-10221777)
chr2 (629-694)||(1130651-1130715)
[»] chr1 (8 HSPs)
chr1 (629-701)||(42241878-42241950)
chr1 (625-688)||(26801445-26801508)
chr1 (624-691)||(39984782-39984849)
chr1 (602-687)||(15939344-15939430)
chr1 (642-691)||(31165856-31165905)
chr1 (548-582)||(15939469-15939503)
chr1 (594-676)||(25943004-25943087)
chr1 (642-691)||(27458480-27458529)
[»] chr8 (6 HSPs)
chr8 (580-690)||(11175558-11175671)
chr8 (643-692)||(10839987-10840036)
chr8 (580-692)||(35171003-35171118)
chr8 (661-691)||(4606149-4606179)
chr8 (624-682)||(16816196-16816254)
chr8 (624-689)||(15175095-15175160)
[»] chr5 (4 HSPs)
chr5 (628-693)||(34366960-34367025)
chr5 (602-676)||(35578375-35578450)
chr5 (625-693)||(5474123-5474191)
chr5 (625-692)||(5552395-5552462)
[»] chr7 (7 HSPs)
chr7 (624-691)||(29408058-29408125)
chr7 (643-693)||(48637468-48637518)
chr7 (580-691)||(47084741-47084854)
chr7 (642-693)||(33407325-33407376)
chr7 (659-696)||(30154249-30154286)
chr7 (584-701)||(32450384-32450504)
chr7 (642-695)||(46435721-46435773)
[»] chr6 (1 HSPs)
chr6 (642-691)||(11785823-11785872)


Alignment Details
Target: chr3 (Bit Score: 577; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 191 - 951
Target Start/End: Complemental strand, 28763677 - 28762924
Alignment:
Q  191 ttgagaacatcaacaaactatagaagtttggagaatcaaagccgaaaatagtaaaagtctaa-gtgtgtgttggtccgtaacatgttaatgttgaatcta 289  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28763677 ttgagaacatcaacaaactatacaagtttggagaatcaaagccgaaaatagtaaaagtctaaagtgtgtgttggtccgtaacatgttaatgttgaatcta 28763578  T
Q  290 gttcaacaaaagtatctgttaggaacgtgacttatcactaaaatgacaattacttagcttactcattttattggtagcaattcttacaagagatattcaa 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28763577 gttcaacaaaagtatctgttaggaacgtgacttatcactaaaatgacaattacttagcttactcattttattggtagcaattctcacaagagatattcaa 28763478  T
Q  390 ttttgtataaaccttcaatttggtctttaaattaccacccttttatttggtccctgagctatcaaaatataataaatagtttccgaaccattaaaaatca 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28763477 ttttgtataaaccttcaatttggtctttaaattaccacccttttatttggtccctgagctatcaaaatataataaatagtttccgaactattaaaaatca 28763378  T
Q  490 atccagnnnnnnnnaaagggtcaatcagttattagtnnnnnnntgtcaaatatggtgatttaaattagatgtttataataaattagtcctttacaaatta 589  Q
    ||||||        ||||||||||||||||||||||       ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  28763377 atccagttttttt-aaagggtcaatcagttattagtaaaaaaatgtcaaatacggtgatttaagttagatgtttataataaattagttctttacaaatta 28763279  T
Q  590 atcatttaagtcaaaatatatgtaccatgatcatatttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaatt 689  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  28763278 atcatttaagtcaaaatatatgtaccatgatcatatttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatggtcaaatt 28763179  T
Q  690 caccacttttaaggcggtcctccttgtggtgggagggatgcgtccatgttgggtgctaaggagggttcacggtcggactggtttgctgaaagtgttgttt 789  Q
    ||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28763178 caccactcttacggcggtcctccttgtggtggga-ggatgcgtccatgttgggtgctaaggagggttcatggtcggactggtttgctgaaagtgttgttt 28763080  T
Q  790 tgaaagtggggagcagtctcacaaattcgttttggtttcaatccgtgggtggagaggtcgtctctgagaactagcttccctccttctttttcaggtttct 889  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||  |||||||| ||||||||||||||||    
T  28763079 tgaaagtggggagcggtctcacaaattcgttttgg-ttcaatccgtgggtggagaggtcatctctgagaactaagttccctcc-tctttttcaggtttct 28762982  T
Q  890 gatcaatgggggtgatagggtaattagggtccacagatatttggtattggttgggagacagg 951  Q
    ||||||| ||||||||||||||  |||||| | |||||||  |||||||| |||||||||||    
T  28762981 gatcaat-ggggtgatagggta--tagggt-cgcagatatggggtattgggtgggagacagg 28762924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 579 - 696
Target Start/End: Complemental strand, 36261113 - 36260993
Alignment:
Q  579 tttacaaattaatcatttaagtca--aaatatatgtaccatgatcatattt-catcaaatttagttaaaaaatgtttatttggacgtttaatgttaagtt 675  Q
    |||||||||| ||||||||||| |  ||||||||| ||||||||| ||||| ||||||| |  |||||||| ||||||||||||| |||||||||||||     
T  36261113 tttacaaattgatcatttaagttagaaaatatatgcaccatgatcctattttcatcaaactctgttaaaaagtgtttatttggacatttaatgttaagta 36261014  T
Q  676 ggtatgtccaaattcaccact 696  Q
    |||||||||||||||| ||||    
T  36261013 ggtatgtccaaattcaacact 36260993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 28763792 - 28763700
Alignment:
Q  64 gggtcagtccacaacaaagtcaatcacgcaaattcgcaatgacaaatttgaaaatgaaagtgaaaataaaggtcaacgcttaagcaaaacatctgattgc 163  Q
    |||||||||||||||| ||||||||||||||        ||||||||||||||||||||      || ||||||||||||||||||||||||||||||||    
T  28763792 gggtcagtccacaacagagtcaatcacgcaa--------tgacaaatttgaaaatgaaa------attaaggtcaacgcttaagcaaaacatctgattgc 28763707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 579 - 693
Target Start/End: Complemental strand, 47731293 - 47731176
Alignment:
Q  579 tttacaaattaatcatttaagtca-aaatatatgtaccatgatcatatt--tcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagtt 675  Q
    |||||||||| ||||||||||||| ||| || || | ||| || |||||  |||||||| ||| ||||||| ||||||| |||||||||||||||||||     
T  47731293 tttacaaattgatcatttaagtcataaaaatctgcatcattattatatttctcatcaaacttaattaaaaagtgtttatatggacgtttaatgttaagtc 47731194  T
Q  676 ggtatgtccaaattcacc 693  Q
    ||||| | ||||||||||    
T  47731193 ggtattttcaaattcacc 47731176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 629 - 694
Target Start/End: Complemental strand, 33282944 - 33282879
Alignment:
Q  629 atcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcacca 694  Q
    |||||| | ||||||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||    
T  33282944 atcaaactcagttaaaaagtgtttatgtggacgtttaatgttaagttggtaggtctaaattcacca 33282879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 624 - 691
Target Start/End: Original strand, 16194121 - 16194188
Alignment:
Q  624 atttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattca 691  Q
    ||||||||||||| | | ||||||||||| | |||| ||||||| |||||||||| ||||||||||||    
T  16194121 atttcatcaaattcaatcaaaaaatgtttttgtggatgtttaatattaagttggtttgtccaaattca 16194188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 624 - 691
Target Start/End: Complemental strand, 29306460 - 29306393
Alignment:
Q  624 atttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattca 691  Q
    ||||||||||| ||| | |||||  |||||| |||| |||||||||||||||||| ||||||||||||    
T  29306460 atttcatcaaacttaatcaaaaagcgtttatatggatgtttaatgttaagttggtttgtccaaattca 29306393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 691
Target Start/End: Complemental strand, 42339988 - 42339939
Alignment:
Q  642 aaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattca 691  Q
    ||||||||||||| |||| ||||||||||||||| || ||||||||||||    
T  42339988 aaaaaatgtttatgtggatgtttaatgttaagttcgtctgtccaaattca 42339939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 689
Target Start/End: Original strand, 18680661 - 18680726
Alignment:
Q  624 atttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaatt 689  Q
    ||||||||||| | | | ||||| ||||| | |||| |||||||||||||||||| ||||||||||    
T  18680661 atttcatcaaactcaatcaaaaagtgtttgtatggatgtttaatgttaagttggtttgtccaaatt 18680726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 625 - 692
Target Start/End: Original strand, 26644835 - 26644902
Alignment:
Q  625 tttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcac 692  Q
    |||||||||| ||||||||||| ||||||||||||| || |||||||| |||||||||||||||||||    
T  26644835 tttcatcaaacttagttaaaaagtgtttatttggacattcaatgttaaattggtatgtccaaattcac 26644902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 625 - 696
Target Start/End: Complemental strand, 24195151 - 24195080
Alignment:
Q  625 tttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcaccact 696  Q
    |||| ||||| | ||||||||| ||||||| || |||||| ||||||||||||||||||||| |||| ||||    
T  24195151 tttcttcaaactcagttaaaaagtgtttatgtgaacgtttgatgttaagttggtatgtccaatttcatcact 24195080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 672
Target Start/End: Original strand, 48546754 - 48546850
Alignment:
Q  579 tttacaaattaatcatttaagtca--aaatatatgtaccatgatcatattt-catcaaatttagttaaaaaatgtttatttggacgtttaatgttaa 672  Q
    |||||||||| ||| ||||| |||  |||||| || ||||| ||| ||||| ||||||| ||||||||||| ||||||| ||||||||| |||||||    
T  48546754 tttacaaattgatcctttaaatcataaaatatttgcaccattatcctattttcatcaaacttagttaaaaagtgtttatgtggacgtttgatgttaa 48546850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 688
Target Start/End: Complemental strand, 10402292 - 10402229
Alignment:
Q  625 tttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaat 688  Q
    |||||||||| ||||||||||||||||||| |||||  ||| |||||| |||| | ||||||||    
T  10402292 tttcatcaaagttagttaaaaaatgtttatatggacaattattgttaatttggcaggtccaaat 10402229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 642 - 696
Target Start/End: Original strand, 3161441 - 3161495
Alignment:
Q  642 aaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcaccact 696  Q
    ||||||| ||||| |||||||||||||||||||| ||  ||| ||||||||||||    
T  3161441 aaaaaatatttatgtggacgtttaatgttaagtttgtgggtctaaattcaccact 3161495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 548 - 582
Target Start/End: Original strand, 44454610 - 44454644
Alignment:
Q  548 tttaaattagatgtttataataaattagtccttta 582  Q
    ||||| |||||||||||||||||||||||||||||    
T  44454610 tttaagttagatgtttataataaattagtccttta 44454644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 642 - 692
Target Start/End: Original strand, 56094182 - 56094232
Alignment:
Q  642 aaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcac 692  Q
    ||||||||||| | |||| |||||||||||||||| | |||||||||||||    
T  56094182 aaaaaatgtttgtgtggatgtttaatgttaagttgatttgtccaaattcac 56094232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 689
Target Start/End: Original strand, 5750623 - 5750688
Alignment:
Q  624 atttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaatt 689  Q
    ||||||||||| | | | ||||| ||||| | |||| |||||||||||||||||| ||||||||||    
T  5750623 atttcatcaaactcaatcaaaaagtgtttgtatggatgtttaatgttaagttggtttgtccaaatt 5750688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 693
Target Start/End: Complemental strand, 7556146 - 7556085
Alignment:
Q  632 aaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcacc 693  Q
    ||||| ||||||||  ||||||| |  | |||||||||||||||||||||| ||||||||||    
T  7556146 aaattcagttaaaatgtgtttatgtaaatgtttaatgttaagttggtatgttcaaattcacc 7556085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 680
Target Start/End: Complemental strand, 26003962 - 26003921
Alignment:
Q  639 gttaaaaaatgtttatttggacgtttaatgttaagttggtat 680  Q
    |||||||| ||||||| |||| ||||||||||||||||||||    
T  26003962 gttaaaaagtgtttatgtggaagtttaatgttaagttggtat 26003921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 602 - 698
Target Start/End: Original strand, 931132 - 931229
Alignment:
Q  602 aaaatatatgtaccatgatcata-tttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcaccacttt 698  Q
    |||||||||| | ||| |||||| |||||||||| ||||||||||  ||||||| ||| |||||||||||||||||||| || ||||||| |||||||    
T  931132 aaaatatatgcatcattatcatactttcatcaaacttagttaaaaggtgtttatgtggccgtttaatgttaagttggtaggttcaaattctccacttt 931229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 639 - 696
Target Start/End: Original strand, 9158619 - 9158676
Alignment:
Q  639 gttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcaccact 696  Q
    |||||||| |||||||||||| |||| |||||||||||||||||||||| ||||||||    
T  9158619 gttaaaaagtgtttatttggaagtttgatgttaagttggtatgtccaaactcaccact 9158676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 624 - 691
Target Start/End: Original strand, 9298647 - 9298714
Alignment:
Q  624 atttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattca 691  Q
    ||||||||||||| ||| ||||| | ||||| |||| ||||||||||||||| || ||||||||||||    
T  9298647 atttcatcaaattcagtcaaaaagtatttatgtggatgtttaatgttaagtttgtctgtccaaattca 9298714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 640 - 693
Target Start/End: Complemental strand, 11862489 - 11862436
Alignment:
Q  640 ttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcacc 693  Q
    ||||||||||||||| |||||||||| || || ||||||| |||||||||||||    
T  11862489 ttaaaaaatgtttatgtggacgtttagtgctatgttggtaggtccaaattcacc 11862436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 625 - 693
Target Start/End: Complemental strand, 37817848 - 37817779
Alignment:
Q  625 tttcatcaaatttagttaaaaaa-tgtttatttggacgtttaatgttaagttggtatgtccaaattcacc 693  Q
    |||||||||||||| |||||||| ||||||| | |||  |||||||||||||  ||||||||||||||||    
T  37817848 tttcatcaaatttaattaaaaaaatgtttatgtagacacttaatgttaagttaatatgtccaaattcacc 37817779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 624 - 692
Target Start/End: Original strand, 21436933 - 21437001
Alignment:
Q  624 atttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcac 692  Q
    ||||||||||| | ||| ||||| ||||| | |||| |||||||||||||||| | |||||||||||||    
T  21436933 atttcatcaaactaagtcaaaaagtgtttgtgtggatgtttaatgttaagttgatttgtccaaattcac 21437001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 625 - 685
Target Start/End: Original strand, 21508825 - 21508885
Alignment:
Q  625 tttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtcca 685  Q
    |||||||||||  ||| ||||| ||||||| ||||| |||||||||||||||||| |||||    
T  21508825 tttcatcaaatgcagtaaaaaagtgtttatgtggacatttaatgttaagttggtaggtcca 21508885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 691
Target Start/End: Complemental strand, 10221777 - 10221734
Alignment:
Q  648 tgtttatttggacgtttaatgttaagttggtatgtccaaattca 691  Q
    ||||||| |||| |||||||||||||||||| ||||||||||||    
T  10221777 tgtttatgtggatgtttaatgttaagttggtttgtccaaattca 10221734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 694
Target Start/End: Original strand, 1130651 - 1130715
Alignment:
Q  629 atcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcacca 694  Q
    |||||| | ||||||||| ||||||| |||| ||||||||||| ||||||| ||| ||||||||||    
T  1130651 atcaaactcagttaaaaagtgtttatgtgga-gtttaatgttaggttggtaggtctaaattcacca 1130715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 629 - 701
Target Start/End: Original strand, 42241878 - 42241950
Alignment:
Q  629 atcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcaccacttttaa 701  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||||  ||| || |||||||||||| ||||    
T  42241878 atcaaacttagttaaaaagtgtttatgtggacgtttaatgttaagttcatatatctaaattcaccactcttaa 42241950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 625 - 688
Target Start/End: Complemental strand, 26801508 - 26801445
Alignment:
Q  625 tttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaat 688  Q
    ||||||||| |||||||||||||||||||| || |   |||||||||||||||||| |||||||    
T  26801508 tttcatcaagtttagttaaaaaatgtttatatgaataattaatgttaagttggtatatccaaat 26801445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 624 - 691
Target Start/End: Original strand, 39984782 - 39984849
Alignment:
Q  624 atttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattca 691  Q
    ||||||||||| | | | ||||||||||||| |||| |||||||||||||||||| | ||||||||||    
T  39984782 atttcatcaaactcaatcaaaaaatgtttatgtggatgtttaatgttaagttggtttatccaaattca 39984849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 602 - 687
Target Start/End: Complemental strand, 15939430 - 15939344
Alignment:
Q  602 aaaatatatgtaccatgatcatattt-catcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaa 687  Q
    ||||||| || ||||| ||||||||| |||||||   ||||||||| |||  || |||||||||||| |||||||||||||||||||    
T  15939430 aaaatatctgcaccattatcatattttcatcaaacccagttaaaaagtgtgcatgtggacgtttaatcttaagttggtatgtccaaa 15939344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 691
Target Start/End: Complemental strand, 31165905 - 31165856
Alignment:
Q  642 aaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattca 691  Q
    ||||| ||||||| |||| |||||||||||||||||| ||||||||||||    
T  31165905 aaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattca 31165856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 548 - 582
Target Start/End: Complemental strand, 15939503 - 15939469
Alignment:
Q  548 tttaaattagatgtttataataaattagtccttta 582  Q
    ||||| |||||||||||||||||||||||||||||    
T  15939503 tttaagttagatgtttataataaattagtccttta 15939469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 676
Target Start/End: Complemental strand, 25943087 - 25943004
Alignment:
Q  594 tttaagtcaaaatatatgtaccatgatcatatttcatcaaat--ttagttaaaaaatgtttatttggacgtttaatgttaagttg 676  Q
    ||||||||||||||| |  ||||| ||| | |||||||||||  | || |||||||||||||| | |||||||||||||||||||    
T  25943087 tttaagtcaaaatatttc-accattatcttttttcatcaaatactaaggtaaaaaatgtttatgttgacgtttaatgttaagttg 25943004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 691
Target Start/End: Complemental strand, 27458529 - 27458480
Alignment:
Q  642 aaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattca 691  Q
    ||||| ||||||| |||| | |||||||||||||||| ||||||||||||    
T  27458529 aaaaagtgtttatgtggatgcttaatgttaagttggtttgtccaaattca 27458480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 690
Target Start/End: Complemental strand, 11175671 - 11175558
Alignment:
Q  580 ttacaaattaatcatttaagtc--aaaatatatgtaccatgatcata-tttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttg 676  Q
    |||||||||  |||||||||||  ||||||| || ||||| ||| || ||| |||||| ||| | ||||| ||||||| |||| ||||||||||||||||    
T  11175671 ttacaaattggtcatttaagtcgtaaaatatttgcaccattatcctaattttatcaaacttaatcaaaaagtgtttatgtggatgtttaatgttaagttg 11175572  T
Q  677 gtatgtccaaattc 690  Q
    || |||||||||||    
T  11175571 gtttgtccaaattc 11175558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 692
Target Start/End: Complemental strand, 10840036 - 10839987
Alignment:
Q  643 aaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcac 692  Q
    |||| ||||||| ||||||||| ||||||||||| |||||||||||||||    
T  10840036 aaaagtgtttatgtggacgttttatgttaagttgatatgtccaaattcac 10839987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 580 - 692
Target Start/End: Complemental strand, 35171118 - 35171003
Alignment:
Q  580 ttacaaattaatcatttaagtca--aaatatatgtaccatgatcata-tttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttg 676  Q
    |||||||||  ||||||||||||  ||||||||| ||||| ||| || |||||||||| | ||| ||||| ||||| | | || |||||||| |||||||    
T  35171118 ttacaaattggtcatttaagtcataaaatatatgcaccattatcctaatttcatcaaactcagtcaaaaagtgtttgtatagatgtttaatgctaagttg 35171019  T
Q  677 gtatgtccaaattcac 692  Q
     | |||||||||||||    
T  35171018 atttgtccaaattcac 35171003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 661 - 691
Target Start/End: Original strand, 4606149 - 4606179
Alignment:
Q  661 gtttaatgttaagttggtatgtccaaattca 691  Q
    |||||||||||||||||||||||||||||||    
T  4606149 gtttaatgttaagttggtatgtccaaattca 4606179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 624 - 682
Target Start/End: Complemental strand, 16816254 - 16816196
Alignment:
Q  624 atttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgt 682  Q
    ||||||||||| |   ||||||||| ||||| ||||| |||||||||||||||||||||    
T  16816254 atttcatcaaactcgattaaaaaatatttatgtggacatttaatgttaagttggtatgt 16816196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 689
Target Start/End: Original strand, 15175095 - 15175160
Alignment:
Q  624 atttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaatt 689  Q
    ||||||||||| | | | ||| ||||||||| |||| |||||||||||||||||| |||| |||||    
T  15175095 atttcatcaaactcaatcaaacaatgtttatgtggatgtttaatgttaagttggtttgtctaaatt 15175160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 628 - 693
Target Start/End: Original strand, 34366960 - 34367025
Alignment:
Q  628 catcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcacc 693  Q
    ||||||| ||||||||||| || |||| |||||||||| ||||||||||| ||||| |||||||||    
T  34366960 catcaaacttagttaaaaagtgcttatgtggacgtttattgttaagttggcatgtctaaattcacc 34367025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 602 - 676
Target Start/End: Original strand, 35578375 - 35578450
Alignment:
Q  602 aaaatatatgtaccatgatcata-tttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttg 676  Q
    |||||||| ||||||||||| || |||||||| | ||||||||||| |||||||||| ||||||| | ||||||||    
T  35578375 aaaatatacgtaccatgatcttactttcatcagacttagttaaaaagtgtttatttgaacgtttagtattaagttg 35578450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 625 - 693
Target Start/End: Complemental strand, 5474191 - 5474123
Alignment:
Q  625 tttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcacc 693  Q
    |||||||||| ||||||||||| ||||||| || || ||||||||||  ||||||||| ||||| ||||    
T  5474191 tttcatcaaacttagttaaaaagtgtttatgtgcacatttaatgttagattggtatgttcaaatccacc 5474123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 692
Target Start/End: Original strand, 5552395 - 5552462
Alignment:
Q  625 tttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcac 692  Q
    |||||| |||||| |||||||| | ||||| |||||||||||||||||||| ||  || |||||||||    
T  5552395 tttcattaaatttggttaaaaagtatttatgtggacgtttaatgttaagttagtgagttcaaattcac 5552462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 624 - 691
Target Start/End: Complemental strand, 29408125 - 29408058
Alignment:
Q  624 atttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattca 691  Q
    ||||||||||| | | | ||||| ||||||| |||| |||||||||||||||||| ||||||||||||    
T  29408125 atttcatcaaactcaatcaaaaagtgtttatatggatgtttaatgttaagttggtttgtccaaattca 29408058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 643 - 693
Target Start/End: Original strand, 48637468 - 48637518
Alignment:
Q  643 aaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcacc 693  Q
    ||||||| ||||  ||||| |||||||||||||||||||||||||||||||    
T  48637468 aaaaatgcttatgcggacgcttaatgttaagttggtatgtccaaattcacc 48637518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 691
Target Start/End: Original strand, 47084741 - 47084854
Alignment:
Q  580 ttacaaattaatcatttaagtcaaaatatatgtaccatgatcat-atttcatcaaatttagttaaaaaatgtttatttggacgtttaatg-ttaagttgg 677  Q
    |||||||||  || ||||||||||||||| || ||||| ||| | |||||| |||| ||| | ||||| ||||||| |||| |||||||| |||||||||    
T  47084741 ttacaaattggtcctttaagtcaaaatatttgcaccattatcctaatttcaacaaacttaatcaaaaagtgtttatgtggatgtttaatgtttaagttgg 47084840  T
Q  678 tatgtccaaattca 691  Q
    | |||| |||||||    
T  47084841 tttgtcaaaattca 47084854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 642 - 693
Target Start/End: Complemental strand, 33407376 - 33407325
Alignment:
Q  642 aaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcacc 693  Q
    ||||||||||||  | ||||||||||||||||||| |||| |||||||||||    
T  33407376 aaaaaatgtttaagttgacgtttaatgttaagttgatatgcccaaattcacc 33407325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 696
Target Start/End: Original strand, 30154249 - 30154286
Alignment:
Q  659 acgtttaatgttaagttggtatgtccaaattcaccact 696  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  30154249 acgtttaatgttaagttggtatgtctaaaatcaccact 30154286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 701
Target Start/End: Complemental strand, 32450504 - 32450384
Alignment:
Q  584 aaattaatcatttaagtca--aaatatatgtaccatgatcatattt-catcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtat 680  Q
    ||||| |||||||||||||  ||||| ||| | ||| ||| ||||| ||||||| |  |||||||  | ||||| | ||||||||||||||||||| | |    
T  32450504 aaattgatcatttaagtcagaaaatacatgcatcattatcttattttcatcaaactcggttaaaaggtatttatgtagacgtttaatgttaagttgattt 32450405  T
Q  681 gtccaaattcaccacttttaa 701  Q
    || ||||||||||| ||||||    
T  32450404 gttcaaattcaccatttttaa 32450384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 695
Target Start/End: Complemental strand, 46435773 - 46435721
Alignment:
Q  642 aaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattcaccac 695  Q
    ||||||| ||||||||||  |||||||||||||||||  |||||||||||||||    
T  46435773 aaaaaatatttatttggatttttaatgttaagttggt-ggtccaaattcaccac 46435721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 691
Target Start/End: Complemental strand, 11785872 - 11785823
Alignment:
Q  642 aaaaaatgtttatttggacgtttaatgttaagttggtatgtccaaattca 691  Q
    ||||| ||||||| |||| |||||||||||||||||| ||||||||||||    
T  11785872 aaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattca 11785823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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