View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4737-Insertion-4 (Length: 880)
Name: NF4737-Insertion-4
Description: NF4737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4737-Insertion-4 |
 | |
|
| [»] scaffold0256 (2 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
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| [»] scaffold0133 (2 HSPs) |
| | |
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Alignment Details
Target: scaffold0256 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 577 - 880
Target Start/End: Original strand, 11044 - 11345
Alignment:
| Q |
577 |
tatgatgaagaggaggtaaataagtatgtcctaagtgccacctctttgattttgtccttcagcattttgagcgcggagtcctggtttttcacaaatttcc |
676 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| |||||||||| |
|
|
| T |
11044 |
tatgatgaagaggaggtaaataagtatgtcctaagtgccacctctttgattttgtccttcagcatttcgagcacggagtcgtggttttttacaaatttcc |
11143 |
T |
|
| Q |
677 |
atacatcaagagatgcaatattg-caaaagccttgtggaaagtctccattgataagaacccttgtgagaaccatgacatgatccttaacatttcaggagg |
775 |
Q |
| |
|
||| ||||||||||||||| | ||||||| |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
11144 |
atatgccaagagatgcaatatagtcaaaagcattgtgg-aagtctccattgataagaagccttgtgacaaccatgacatgatccttaacatttcagga-g |
11241 |
T |
|
| Q |
776 |
gaccattgaatgnnnnnnngtcactgatctcgagcaagcgaagggaaattgttactgatgatcttatgcttcgcatcatgaaaattggctgcaatagtgg |
875 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
11242 |
gaccgttgaatgtttttttgtcactgatctcgagcaagcgaa-ggaaattgttactgatgatcttatgcttcgcatcatgaacattggctgcaatattgg |
11340 |
T |
|
| Q |
876 |
gaact |
880 |
Q |
| |
|
||||| |
|
|
| T |
11341 |
gaact |
11345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 382 - 574
Target Start/End: Original strand, 10720 - 10912
Alignment:
| Q |
382 |
tgatgatagtgagtatgtgaagtaaatgcaaagtaaagcacaaactcccgtaagcctctgagaataggagatgtcttgacctctgcaacctgaaggagcg |
481 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||||||| |||||||||| ||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
10720 |
tgatgatagtgagtatgtgaagcaaatgcaatgttaagcacaaaatcccgtaagcgtctgagaataggacatgtcttgacctctgccacctgaaggagcg |
10819 |
T |
|
| Q |
482 |
gtggtgagatccaaccgattctgaaaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattttggaa |
574 |
Q |
| |
|
| ||| |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10820 |
gcggtaagatccaaccgactctgcaaggatagataatttctcagtcaacttgaacgacaaagcctgcacccttgagtgttcaacattttggaa |
10912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 2e-51; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 576 - 880
Target Start/End: Complemental strand, 21629432 - 21629132
Alignment:
| Q |
576 |
atatgatgaagaggaggtaaataagtatgtcctaagtgccacctctttgattttgtccttcagcattttgagcgcggagtcctggtttttcacaaatttc |
675 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||||||| |||| |||||||||||||||| ||| ||| ||||||| || ||||||||||||| |
|
|
| T |
21629432 |
atatgatgaagagaaggtaattaggtatgtcctaagtgcctcctccttgattttgtccttca---tttctagcacggagtctcagtgtttcacaaatttc |
21629336 |
T |
|
| Q |
676 |
catacatcaagagatgcaatattg-caaaagccttgtggaaagtctccattgataagaacccttgtgagaaccatgacatgatccttaacattt-cagga |
773 |
Q |
| |
|
|||||||| ||||||||||||||| |||| |||||| |||| ||||||||| ||||||| ||||||| | |||| ||||||||| |||||||| ||||| |
|
|
| T |
21629335 |
catacatcgagagatgcaatattgtcaaaggccttgaggaa-gtctccattaataagaagtcttgtgacagccataacatgatccctaacattttcagga |
21629237 |
T |
|
| Q |
774 |
gggaccattgaatgnnnnnnngtcactgatctcgagcaagcgaagggaaattgttactgatgatcttatgcttcgcatcatgaaaattggctgcaatagt |
873 |
Q |
| |
|
|| ||| ||||||| |||||| ||||||||||||||| || ||||| ||||||||||||||| |||||| ||||||| ||||||||| ||| | |
|
|
| T |
21629236 |
gg-accgttgaatgttcttttgtcacttatctcgagcaagcgatgg-aaattcttactgatgatcttacgcttcgtgtcatgaatattggctgccatatt |
21629139 |
T |
|
| Q |
874 |
gggaact |
880 |
Q |
| |
|
||||||| |
|
|
| T |
21629138 |
gggaact |
21629132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 576 - 867
Target Start/End: Original strand, 233518 - 233808
Alignment:
| Q |
576 |
atatgatgaagaggaggtaaataagtatgtcctaagtgccacctctttgattttgtccttcagcattttgagcgcggagtcctggtttttcacaaatttc |
675 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||||| ||| |||| |||||||||||||||||||||| ||| ||| ||| | ||||||||||||||| |
|
|
| T |
233518 |
atatgatgaagagaaagtaaataggtatgtcctaagcgcctcctccttgattttgtccttcagcatttctagcacggtgtcacgatttttcacaaatttc |
233617 |
T |
|
| Q |
676 |
catacatcaagagatgcaatattg-caaaagccttgtggaaagtctccattgataagaacccttgtgagaaccatgacatgatccttaaca-tttcagga |
773 |
Q |
| |
|
|| || ||||||||||||||| || |||| ||||| |||||| |||||||| ||||||||||||||| | |||| ||||||||| | ||| |||||||| |
|
|
| T |
233618 |
caaacctcaagagatgcaataatgtcaaaggccttctggaaa-tctccattaataagaacccttgtggcagccataacatgatccctgacagtttcagga |
233716 |
T |
|
| Q |
774 |
gggaccattgaatgnnnnnnngtcactgatctcgagcaagcgaagggaaattgttactgatgatcttatgcttcgcatcatgaaaattggctgc |
867 |
Q |
| |
|
||||| |||||| ||||||| ||| |||||||| ||||||| ||||||||||||||| |||| |||||||||| ||||||||| |
|
|
| T |
233717 |
-ggaccggtgaatgtttgtttctcactgacctcaagcaagcg-gcggaaattcttactgatgatcttacgcttagcatcatgaacattggctgc |
233808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 501 - 578
Target Start/End: Original strand, 233312 - 233389
Alignment:
| Q |
501 |
tctgaaaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattttggaaaata |
578 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
233312 |
tctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacatttctgaaaata |
233389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 21629632 - 21629565
Alignment:
| Q |
506 |
aaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattttggaa |
574 |
Q |
| |
|
||||||||||| ||| | |||||||| ||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
21629632 |
aaggatagata-tttattagtcaactcgaacgccaaggcctgcacccttgagtgttcaacatttcggaa |
21629565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 5e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 576 - 880
Target Start/End: Original strand, 48298634 - 48298937
Alignment:
| Q |
576 |
atatgatgaagaggaggtaaataagtatgtcctaagtgccacctctttgattttgtccttcagcattttgagcgcggagtcctggtttttcacaaatttc |
675 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||| ||| |||| |||||||||||||||||||||| ||| ||| ||| | ||||||||||||||| |
|
|
| T |
48298634 |
atatgatgaagagaaggtaaataggtatgtcctaagcgcctcctccttgattttgtccttcagcatttctagcacggtgtcacgatttttcacaaatttc |
48298733 |
T |
|
| Q |
676 |
catacatcaagagatgcaatattg-caaaagccttgtggaaagtctccattgataagaacccttgtgagaaccatgacatgatccttaaca-tttcagga |
773 |
Q |
| |
|
|| || ||||||||||||||| || |||| ||||| |||||| || ||||| ||||||||||||||| | |||| ||||||||| | ||| |||||||| |
|
|
| T |
48298734 |
cacacctcaagagatgcaataatgtcaaaggccttctggaaa-tcgccattaataagaacccttgtggcagccataacatgatccctgacagtttcagga |
48298832 |
T |
|
| Q |
774 |
gggaccattgaatgnnnnnnngtcactgatctcgagcaagcgaagggaaattgttactgatgatcttatgcttcgcatcatgaaaattggctgcaatagt |
873 |
Q |
| |
|
||||| |||||| ||||||| ||| |||||||| ||||||| ||||||||||||||| |||| |||||||||| ||||||||| || | |
|
|
| T |
48298833 |
-ggaccggtgaatgtttgtttctcactgacctcaagcaagcg-gcggaaattcttactgatgatcttacgcttagcatcatgaacattggctgccatgtt |
48298930 |
T |
|
| Q |
874 |
gggaact |
880 |
Q |
| |
|
||||||| |
|
|
| T |
48298931 |
gggaact |
48298937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 501 - 578
Target Start/End: Original strand, 48298428 - 48298505
Alignment:
| Q |
501 |
tctgaaaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattttggaaaata |
578 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
48298428 |
tctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagagttcaacatttctgaaaata |
48298505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 610 - 871
Target Start/End: Complemental strand, 16580643 - 16580384
Alignment:
| Q |
610 |
agtgccacctctttgattttgtccttcagcattttgagcgcggagtcctggtttttcacaaatttccatacatcaagagatgcaatattg-caaaagcct |
708 |
Q |
| |
|
|||||| |||| ||| |||||||||||| ||||| ||| ||| || | ||||||||||||| ||||||||||||||||||||||||| || |||||| |
|
|
| T |
16580643 |
agtgcctcctccttggttttgtccttcaacatttctagcacggcgtttcgatttttcacaaattaccatacatcaagagatgcaatattgtcacaagcct |
16580544 |
T |
|
| Q |
709 |
tgtggaaagtctccattgataagaacccttgtgagaaccatgacatgatccttaacatttcaggagggaccattgaatgnnnnnnngtcactgatctcga |
808 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||| ||||||||||||||||||||||||| || |||| ||||||| |||||||||||||| |
|
|
| T |
16580543 |
tgtggaa-gtctccattgataagaagcattgtgacaaccatgacatgatccttaacattttcgggaggacagttgaatg-ttttttgtcactgatctcga |
16580446 |
T |
|
| Q |
809 |
gcaagcgaagggaaattgttactgatgatcttatgcttcgcatcatgaaaattggctgcaata |
871 |
Q |
| |
|
||||||| | |||||| ||||||||||||||| ||||| | ||||||| ||| ||||||||| |
|
|
| T |
16580445 |
gcaagcg-actgaaattcttactgatgatcttacgcttcacgtcatgaacattagctgcaata |
16580384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 610 - 871
Target Start/End: Original strand, 16614737 - 16614996
Alignment:
| Q |
610 |
agtgccacctctttgattttgtccttcagcattttgagcgcggagtcctggtttttcacaaatttccatacatcaagagatgcaatattg-caaaagcct |
708 |
Q |
| |
|
|||||| |||| ||| |||||||||||| ||||| ||| ||| || | ||||||||||||| ||||||||||||||||||||||||| || |||||| |
|
|
| T |
16614737 |
agtgcctcctccttggttttgtccttcaacatttctagcacggcgtttcgatttttcacaaattaccatacatcaagagatgcaatattgtcacaagcct |
16614836 |
T |
|
| Q |
709 |
tgtggaaagtctccattgataagaacccttgtgagaaccatgacatgatccttaacatttcaggagggaccattgaatgnnnnnnngtcactgatctcga |
808 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||| ||||||||||||||||||||||||| || |||| ||||||| |||||||||||||| |
|
|
| T |
16614837 |
tgtggaa-gtctccattgataagaagcattgtgacaaccatgacatgatccttaacattttcgggaggacagttgaatg-ttttttgtcactgatctcga |
16614934 |
T |
|
| Q |
809 |
gcaagcgaagggaaattgttactgatgatcttatgcttcgcatcatgaaaattggctgcaata |
871 |
Q |
| |
|
||||||| | |||||| ||||||||||||||| ||||| | ||||||| ||| ||||||||| |
|
|
| T |
16614935 |
gcaagcg-actgaaattcttactgatgatcttacgcttcacgtcatgaacattagctgcaata |
16614996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 610 - 871
Target Start/End: Complemental strand, 16874504 - 16874244
Alignment:
| Q |
610 |
agtgccacctctttgattttgtccttcagcattttgagcgcggagtcctggtttttcacaaatttccatacatcaa-gagatgcaatattg-caaaagcc |
707 |
Q |
| |
|
|||||| |||| ||| |||||||||||| ||||| ||| ||| ||| || ||||||||||||||||||||||||| ||||||||||| || || ||||| |
|
|
| T |
16874504 |
agtgcctcctccttggttttgtccttcaacatttccagcacggcgtcttgatttttcacaaatttccatacatcaaagagatgcaataatgtcacaagcc |
16874405 |
T |
|
| Q |
708 |
ttgtggaaagtctccattgataagaacccttgtgagaaccatgacatgatccttaacatttcaggagggaccattgaatgnnnnnnngtcactgatctcg |
807 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||| |||||||||||||||| |||||||| || ||||| ||||||| ||||||||||||| |
|
|
| T |
16874404 |
ttgtggaa-gtctccattgataagaagcattgtgacaaccatgacatgatccataacattttcgggaggaccgttgaatg-ttttttgtcactgatctcg |
16874307 |
T |
|
| Q |
808 |
agcaagcgaagggaaattgttactgatgatcttatgcttcgcatcatgaaaattggctgcaata |
871 |
Q |
| |
|
|||||| | |||||| ||||||||||||||| ||||| | ||| ||| ||||||||||||| |
|
|
| T |
16874306 |
agcaagtg-gctgaaattcttactgatgatcttacgcttcacgtcaggaacattggctgcaata |
16874244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 579 - 768
Target Start/End: Original strand, 16977340 - 16977530
Alignment:
| Q |
579 |
tgatgaagaggaggtaaataagtatgtcctaagtgccacctctttgattttgtcc-ttcagcattttgagcgcggagtcctggtttttcacaaatttcca |
677 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| | |||| |||||||| ||| |||||||| | | | |||||| | ||||||||||||||||| |
|
|
| T |
16977340 |
tgatgaaggggaggtaaataggtatgtcctaagtgtctcctccttgattttttcccttcagcatctctaacagggagtctcgttttttcacaaatttcca |
16977439 |
T |
|
| Q |
678 |
tacatcaagagatgcaatattg-caaaagccttgtggaaagtctccattgataagaacccttgtgagaaccatgacatgatccttaacattt |
768 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||| | ||||| ||||| ||||||| |||||| | ||||||||||||||||||||||||| |
|
|
| T |
16977440 |
tacgtcaagagatgcaatattgtcaaaagccttgt-gcaagtccccattcataagaagccttgttacaaccatgacatgatccttaacattt |
16977530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 610 - 715
Target Start/End: Complemental strand, 16572624 - 16572518
Alignment:
| Q |
610 |
agtgccacctctttgattttgtccttcagcattttgagcgcggagtcctggtttttcacaaatttccatacatcaagagatgcaatattg-caaaagcct |
708 |
Q |
| |
|
|||||| |||| ||| |||||||||||| ||||| ||| ||| || | |||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
16572624 |
agtgcctcctccttggttttgtccttcaacatttctagcacggcatctcgatttttcacaaatttccatacatcaagagatgcaataatgtcaaaagcct |
16572525 |
T |
|
| Q |
709 |
tgtggaa |
715 |
Q |
| |
|
||||||| |
|
|
| T |
16572524 |
tgtggaa |
16572518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 16572865 - 16572797
Alignment:
| Q |
506 |
aaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattttggaa |
574 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||| |||| |
|
|
| T |
16572865 |
aaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaa |
16572797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 795 - 871
Target Start/End: Complemental strand, 16572473 - 16572398
Alignment:
| Q |
795 |
gtcactgatctcgagcaagcgaagggaaattgttactgatgatcttatgcttcgcatcatgaaaattggctgcaata |
871 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||||||||||||| ||||| | ||||||| ||||||||||||| |
|
|
| T |
16572473 |
gtcactgatctcgagcaagcgactg-aaattcttactgatgatcttacgcttcacgtcatgaatattggctgcaata |
16572398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 16580886 - 16580818
Alignment:
| Q |
506 |
aaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattttggaa |
574 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||||||||||||||||| | ||| ||||||||||| |||| |
|
|
| T |
16580886 |
aaggatggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaa |
16580818 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 506 - 574
Target Start/End: Original strand, 16614494 - 16614562
Alignment:
| Q |
506 |
aaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattttggaa |
574 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||||||||||||||||| | ||| ||||||||||| |||| |
|
|
| T |
16614494 |
aaggatggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaa |
16614562 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 16874747 - 16874679
Alignment:
| Q |
506 |
aaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattttggaa |
574 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||||||||||||||||| | ||| ||||||||||| |||| |
|
|
| T |
16874747 |
aaggatggataatttctcagtcaattcgaacgccaaagcctgcaccatagagagttcaacatttcggaa |
16874679 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 16991724 - 16991798
Alignment:
| Q |
224 |
gatagaaacaatatttgtctagtttttatcacatcaacttccttttcacctataccactcaggagaaacttcaaa |
298 |
Q |
| |
|
||||||| ||||| ||||| ||||||||| ||| ||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
16991724 |
gatagaataaatatctgtcttgtttttatcgcataaacttccttctcacctataccaaacaggagaaacttcaaa |
16991798 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 482
Target Start/End: Complemental strand, 16573027 - 16572926
Alignment:
| Q |
385 |
tgatagtgagtatgtgaagtaaatgcaa----agtaaagcacaaactcccgtaagcctctgagaataggagatgtcttgacctctgcaacctgaaggagc |
480 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||| |||||||||||||| |||| | ||||||||||| ||||||| || |||| |||||||||||| |
|
|
| T |
16573027 |
tgataatgagtatgagaagtaaatgcaacattagttaagcacaaactcccccaagcttttgagaataggacatgtcttcacgcctgccacctgaaggagc |
16572928 |
T |
|
| Q |
481 |
gg |
482 |
Q |
| |
|
|| |
|
|
| T |
16572927 |
gg |
16572926 |
T |
|
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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 795 - 848
Target Start/End: Original strand, 16691587 - 16691639
Alignment:
| Q |
795 |
gtcactgatctcgagcaagcgaagggaaattgttactgatgatcttatgcttcg |
848 |
Q |
| |
|
||||| |||||||||||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
16691587 |
gtcaccgatctcgagcaagcgatgg-aaattcttactgatgatcttatgcttcg |
16691639 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 576 - 880
Target Start/End: Complemental strand, 7391977 - 7391674
Alignment:
| Q |
576 |
atatgatgaagaggaggtaaataagtatgtcctaagtgccacctctttgattttgtccttcagcattttgagcgcggagtcctggtttttcacaaatttc |
675 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||| | || |||||||||||||| ||||||| ||| ||| ||| | ||||||||||||||| |
|
|
| T |
7391977 |
atatgatgaagagaaggtaaataggtatgtcctaagtgcctcttccttgattttgtccttaagcatttctagcacggcgtctcgatttttcacaaatttc |
7391878 |
T |
|
| Q |
676 |
catacatcaagagatgcaatattg-caaaagccttgtggaaagtctccattgataagaacccttgtgagaaccatgacatgatccttaaca-tttcagga |
773 |
Q |
| |
|
|| || ||||||||||||||| || |||| ||||| |||||| |||||||| ||||||||||||||| | |||| ||||||||| | ||| |||||||| |
|
|
| T |
7391877 |
cagacgtcaagagatgcaataatgtcaaaggccttctggaaa-tctccattaataagaacccttgtggcagccataacatgatccctgacagtttcagga |
7391779 |
T |
|
| Q |
774 |
gggaccattgaatgnnnnnnngtcactgatctcgagcaagcgaagggaaattgttactgatgatcttatgcttcgcatcatgaaaattggctgcaatagt |
873 |
Q |
| |
|
||||| |||||| || |||| ||| |||||||| ||||||| ||||||||||||||| |||| |||||||||| ||||||||| || | |
|
|
| T |
7391778 |
-ggaccggtgaatgtttgtttctcgctgacctcaagcaagcg-tcggaaattcttactgatgatcttacgctttgcatcatgaacattggctgccatgtt |
7391681 |
T |
|
| Q |
874 |
gggaact |
880 |
Q |
| |
|
||||||| |
|
|
| T |
7391680 |
gggaact |
7391674 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 501 - 578
Target Start/End: Complemental strand, 7392183 - 7392106
Alignment:
| Q |
501 |
tctgaaaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattttggaaaata |
578 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7392183 |
tctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacatttcggaaaata |
7392106 |
T |
|
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Target: scaffold0133 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 14418 - 14501
Alignment:
| Q |
105 |
gcaatactcgactagaaataaatatgattaaataaccaataccaatcagaagttggagcatctatacgaagattgcaaaaactg |
188 |
Q |
| |
|
||||||||| |||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
14418 |
gcaatactcaactaaaaatacatatgataaaataaccaataccaatcagaagttggtgcatctaaacgaagattgcaaaaactg |
14501 |
T |
|
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Target: scaffold0133; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 14505 - 14541
Alignment:
| Q |
212 |
agaagttggtgcgatagaaacaatatttgtctagttt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14505 |
agaagttggtgcgatagaaacaatatttgtctagttt |
14541 |
T |
|
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