View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4737-Insertion-5 (Length: 870)
Name: NF4737-Insertion-5
Description: NF4737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4737-Insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 8 - 461
Target Start/End: Complemental strand, 36961108 - 36960655
Alignment:
| Q |
8 |
gaccttgattctgattcactttcttctcttctcttgttgttgtgtccaccatgaaccaatgttttcaagaaagacgagattaacaatgtcaagggagctt |
107 |
Q |
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| T |
36961108 |
gaccttgattctgattcactttcttctcttctcttgttgttgtgtccaccatgaaccaatgttttcaagaaagacgagattaacaatgtcaagggagctt |
36961009 |
T |
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| Q |
108 |
ctatcttcatcttttgcttcttttgcaacaagtggaatcaatggtaaaataagtggaagtaagaaacaaaacaggaaagttgtggaaccaagtatgagga |
207 |
Q |
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| T |
36961008 |
ctatcttcatcttttgcttcttttgcaacaagtggcatcaatggtaaaataagtggaagtaagaaacaaaacaggaaagttgtggaaccaagtatgagga |
36960909 |
T |
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| Q |
208 |
tagcaccacctagcatcccaaaccctactcagaacaagtgagagtggaatactctctatgatttgctcttcttgtctgttttcttagccttttgcttata |
307 |
Q |
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| T |
36960908 |
tagcaccacctagcatcccaaaccctactcagaacaagtgagagaggaatactctctatgatttgctcttcttgtctgttttcttagctttttgcttata |
36960809 |
T |
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| Q |
308 |
tagtatataaactacttagattatgatcttttcttggttattattacttatttttatggttcatggttttaaattgtggttgcggttacaataagatcta |
407 |
Q |
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| T |
36960808 |
tagtatataaactacttagattatgatcttttcttggttattattacttctttttatggttcatggttttaaattgtggttgcggttacaataagatcta |
36960709 |
T |
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| Q |
408 |
tgatattgtgaaaaatgcaatcaaatgcgattgcggctgcgatgtcattgtgga |
461 |
Q |
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| T |
36960708 |
tgatattgtgaaaaatgcaatcaaatgcgattgcggctgcgatgtgattgtgga |
36960655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 455 - 693
Target Start/End: Complemental strand, 36960637 - 36960399
Alignment:
| Q |
455 |
ttgtggatgcatttgcagtcggagactgcaatctaaagccattttacttgtaatgtttaaggatttagagagactaggatggaagaaaatgtacatatga |
554 |
Q |
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| T |
36960637 |
ttgtggatgcatttgtagttggagactgcaatctaaaaccattttacttgtaatgtttaaggatttagagagactaggatggaagaaaatgtacatatga |
36960538 |
T |
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| Q |
555 |
actagaattcaaaataaaaagtgtatttgaattttgaaggattttgctttgcaaaaggcagagaataattagatcaaagaggccttgatgtcaattttac |
654 |
Q |
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| T |
36960537 |
actagaattcaaaataaaaagtgtatttgaattttgaaggattttgctttgcaaaaggcagagaataattagatcaaagaggccttgatgtcaattttac |
36960438 |
T |
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| Q |
655 |
atttgatatcaagaaaatgtctgtaatttaatgttagtg |
693 |
Q |
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| T |
36960437 |
atttgatatcaagaaaatgtctgtaatttaatgttagtg |
36960399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 803 - 870
Target Start/End: Complemental strand, 36960264 - 36960195
Alignment:
| Q |
803 |
gtcatttcgatcttttaatatgtca-gcgctctcactata-tcattgatggaatgaatttaaattataaa |
870 |
Q |
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| T |
36960264 |
gtcatttcgatctttaaatatgtcaagcgctctcactataatcattgatggaatgaatttaaattataaa |
36960195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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