View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4737-Insertion-6 (Length: 795)

Name: NF4737-Insertion-6
Description: NF4737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4737-Insertion-6
NF4737-Insertion-6
[»] chr7 (4 HSPs)
chr7 (483-781)||(47724151-47724444)
chr7 (100-334)||(40278179-40278409)
chr7 (347-405)||(47724038-47724096)
chr7 (19-82)||(40278100-40278163)
[»] chr4 (4 HSPs)
chr4 (100-333)||(34457025-34457254)
chr4 (19-82)||(34456946-34457009)
chr4 (272-331)||(38582148-38582207)
chr4 (280-333)||(49251445-49251498)
[»] chr3 (3 HSPs)
chr3 (280-334)||(44658286-44658340)
chr3 (285-335)||(25376289-25376339)
chr3 (280-333)||(44827629-44827682)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 2e-85; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 483 - 781
Target Start/End: Original strand, 47724151 - 47724444
Alignment:
Q  483 gaattacattatgtacaggtaaaccaaaaacaagagcagtttggtgtaactcattgaattgattgaataccaatgtacactttctcaagatnnnnnnnnn 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||             
T  47724151 gaattacattatgtacaggtaaaccaaaaacaagagcagtttggtgtaactcattcaattgattgaataccaatgtacactttctcaagataaaaagata 47724250  T
Q  583 nnnnnnnnnnnnngaggatggagaggaaatctactctcaatactactcgatccgagaaaacattcctagcatagcatgtatccttccccttcttccgcct 682  Q
                 ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||    
T  47724251 aaaatgaaaaaa-gaggatg-agaggaaatctactctcaatactactcgatccgagaagacattcctaccatagcatgtatcctt-cccttcttccgcct 47724347  T
Q  683 tatgcttatatatgcataatgaattcttgaacatgacaaaaaacgttagttaaattttacatttagcataagcagaac-aagacaaagctccaatgcaaa 781  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| ||||||| |||||||||||||    
T  47724348 tatgcttatatatgcataatg-attcttgaacatgac-aaaaacgttagttaaattttacatttagcat-atcagaacaaagacaaggctccaatgcaaa 47724444  T

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Target: chr7; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 100 - 334
Target Start/End: Original strand, 40278179 - 40278409
Alignment:
Q  100 tgtaaatgaacacaatcaccacccaaatccaaaaattggaatacacaataataataaataaacttggtgctagtgataccggagaaagagagagaaacga 199  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||   | ||||||||||| |||||||| ||||||||||||||||||||    
T  40278179 tgtaaatgaacacaatcaccacccaaatccaaaagttggaatacacaataataa---acaaacttggtgccagtgatactggagaaagagagagaaacga 40278275  T
Q  200 aaga--tagagttgaaagattattatatttggtgtagatgaccatgtttaagatttggtatgatagcctaatcta-tggtgggaaaaattggtccagtat 296  Q
     |||  ||||||||||||| |||   |||||||| ||||||||||||| |||||| |||| |||||||||||| | ||||||||||||||||||||||||    
T  40278276 gagagatagagttgaaagactat---atttggtgcagatgaccatgtt-aagattaggtaggatagcctaatccaatggtgggaaaaattggtccagtat 40278371  T
Q  297 ggaccaatacatcaataggtccaggctatatggcacca 334  Q
    |||||||||||||||||||||||||||||| |||||||    
T  40278372 ggaccaatacatcaataggtccaggctatacggcacca 40278409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 347 - 405
Target Start/End: Original strand, 47724038 - 47724096
Alignment:
Q  347 aaggtgtttaataataataagtgttagggaatacatacagagtgtttatgtatcactgt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47724038 aaggtgtttaataataataagtgttagggaatacatacagagtgtttatgtattactgt 47724096  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 40278100 - 40278163
Alignment:
Q  19 agagggagagattattctgctcaacgttaaggtttagcagcaaggtaaatttattgttattgtt 82  Q
    ||||||||||||||||||| |||| ||| | |||||| |||||  | |||||||||||||||||    
T  40278100 agagggagagattattctgttcaatgttgaagtttagtagcaaaatgaatttattgttattgtt 40278163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 1e-64; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 100 - 333
Target Start/End: Original strand, 34457025 - 34457254
Alignment:
Q  100 tgtaaatgaacacaatcaccacccaaatccaaaaattggaatacacaataataataaataaacttggtgctagtgataccggagaaagagagagaaacga 199  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||   | |||||||||||| ||||||| ||||||||||||||||||||    
T  34457025 tgtaaatgaacacaatcaccacccaaatccaaaagttggaatacacaataataa---acaaacttggtgctggtgatactggagaaagagagagaaacga 34457121  T
Q  200 aaga--tagagttgaaagattattatatttggtgtagatgaccatgtttaagatttggtatgatagcctaatcta-tggtgggaaaaattggtccagtat 296  Q
     |||  |||| |||||||| |||   |||||||| ||||||||||||| || ||| |||| |||||||||||| | ||||||||||||||||||||||||    
T  34457122 gagagatagaattgaaagactat---atttggtgcagatgaccatgttaaa-attaggtaggatagcctaatccaatggtgggaaaaattggtccagtat 34457217  T
Q  297 ggaccaatacatcaataggtccaggctatatggcacc 333  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  34457218 ggaccaatacatcaataggtctaggctatacggcacc 34457254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 34456946 - 34457009
Alignment:
Q  19 agagggagagattattctgctcaacgttaaggtttagcagcaaggtaaatttattgttattgtt 82  Q
    ||||||||||||||||||| |||| ||| | |||||| |||||  | |||||||||||||||||    
T  34456946 agagggagagattattctgttcaatgttgaagtttagtagcaaaatgaatttattgttattgtt 34457009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 38582207 - 38582148
Alignment:
Q  272 atggtgggaaaaattggtccagtatggaccaatacatcaataggtccaggctatatggca 331  Q
    |||||||||||||||||||||  |||||||||||  ||||| |||||| |||| ||||||    
T  38582207 atggtgggaaaaattggtccatcatggaccaatatctcaatgggtccaagctaaatggca 38582148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 49251445 - 49251498
Alignment:
Q  280 aaaaattggtccagtatggaccaatacatcaataggtccaggctatatggcacc 333  Q
    |||||||||||||  ||||||||| || |||||||||||| |||| ||||||||    
T  49251445 aaaaattggtccatcatggaccaaaacttcaataggtccaagctaaatggcacc 49251498  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 44658286 - 44658340
Alignment:
Q  280 aaaaattggtccagtatggaccaatacatcaataggtccaggctatatggcacca 334  Q
    ||||||||||||| |||||||||| || |||||||||||| |||| |||||||||    
T  44658286 aaaaattggtccattatggaccaaaacttcaataggtccaagctaaatggcacca 44658340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 25376339 - 25376289
Alignment:
Q  285 ttggtccagtatggaccaatacatcaataggtccaggctatatggcaccat 335  Q
    ||||||||||||||||||||||||| ||  ||||| |||| ||||||||||    
T  25376339 ttggtccagtatggaccaatacatctatgagtccatgctaaatggcaccat 25376289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 44827629 - 44827682
Alignment:
Q  280 aaaaattggtccagtatggaccaatacatcaataggtccaggctatatggcacc 333  Q
    ||||||||||||| ||||||||||| | |||||||||||| |||| ||| ||||    
T  44827629 aaaaattggtccattatggaccaattcttcaataggtccatgctaaatgccacc 44827682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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