View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4737_high_2 (Length: 255)

Name: NF4737_high_2
Description: NF4737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4737_high_2
NF4737_high_2
[»] chr6 (25 HSPs)
chr6 (130-255)||(4579410-4579535)
chr6 (141-250)||(4574297-4574406)
chr6 (147-255)||(4585631-4585739)
chr6 (141-243)||(4560495-4560597)
chr6 (134-251)||(4557107-4557224)
chr6 (143-255)||(4613747-4613859)
chr6 (149-255)||(4563708-4563814)
chr6 (143-252)||(4598162-4598271)
chr6 (140-243)||(4570960-4571063)
chr6 (141-255)||(4592220-4592334)
chr6 (155-247)||(4480696-4480788)
chr6 (152-247)||(4504434-4504529)
chr6 (48-128)||(4579201-4579280)
chr6 (152-247)||(3171741-3171836)
chr6 (155-244)||(4516324-4516413)
chr6 (155-247)||(4617025-4617117)
chr6 (155-241)||(4461126-4461212)
chr6 (162-247)||(4469813-4469898)
chr6 (171-247)||(4490392-4490468)
chr6 (155-247)||(4492958-4493050)
chr6 (134-230)||(4606945-4607041)
chr6 (155-228)||(4505860-4505933)
chr6 (156-247)||(4392063-4392154)
chr6 (171-242)||(4568072-4568143)
chr6 (153-247)||(4267203-4267297)
[»] chr8 (3 HSPs)
chr8 (140-248)||(20863879-20863987)
chr8 (155-244)||(1674229-1674318)
chr8 (134-236)||(16686315-16686417)
[»] chr5 (1 HSPs)
chr5 (155-247)||(28000136-28000228)
[»] scaffold0477 (1 HSPs)
scaffold0477 (154-247)||(4723-4816)
[»] chr3 (1 HSPs)
chr3 (155-244)||(1281117-1281206)


Alignment Details
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 130 - 255
Target Start/End: Original strand, 4579410 - 4579535
Alignment:
Q  130 gtacaaaagccacttaagtttgatattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctc 229  Q
    ||||||||| |||||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4579410 gtacaaaagtcacttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctc 4579509  T
Q  230 caccttcttcttcaactcaattgcct 255  Q
    ||||||||||||||||||||||||||    
T  4579510 caccttcttcttcaactcaattgcct 4579535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 4574297 - 4574406
Alignment:
Q  141 acttaagtttgatattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttct 240  Q
    ||||||| ||||| |||||| |||||||| |||||||||||||||||||||||  |||| ||||| |||||||||||||||||| |||||||||||||||    
T  4574297 acttaagcttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttct 4574396  T
Q  241 tcaactcaat 250  Q
    ||| ||||||    
T  4574397 tcagctcaat 4574406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 4585631 - 4585739
Alignment:
Q  147 gtttgatattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaact 246  Q
    ||||||| || ||| ||||| || |||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||| |||||||||||||||    
T  4585631 gtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttcaact 4585730  T
Q  247 caattgcct 255  Q
    | |||||||    
T  4585731 cgattgcct 4585739  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 4560495 - 4560597
Alignment:
Q  141 acttaagtttgatattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttct 240  Q
    ||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| | ||||| |||| ||||    
T  4560495 acttatgtttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttct 4560594  T
Q  241 tca 243  Q
    |||    
T  4560595 tca 4560597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 134 - 251
Target Start/End: Original strand, 4557107 - 4557224
Alignment:
Q  134 aaaagccacttaagtttgatattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccacc 233  Q
    ||||| |||||| ||||||| |||||| ||||| || |||||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||||| ||    
T  4557107 aaaagtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgcc 4557206  T
Q  234 ttcttcttcaactcaatt 251  Q
    ||| |||||| |||||||    
T  4557207 ttcgtcttcatctcaatt 4557224  T

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Target: chr6; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 255
Target Start/End: Complemental strand, 4613859 - 4613747
Alignment:
Q  143 ttaagtttgatattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttc 242  Q
    ||||||||||| |||||| |||| ||| || || |||||||| ||||||||||| || ||||| ||||| |||||||||||||||||  |||||||||||    
T  4613859 ttaagtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttc 4613760  T
Q  243 aactcaattgcct 255  Q
    |||||||||||||    
T  4613759 aactcaattgcct 4613747  T

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Target: chr6; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 149 - 255
Target Start/End: Original strand, 4563708 - 4563814
Alignment:
Q  149 ttgatattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactca 248  Q
    ||||| |||||| ||||| || ||||| |||||||| |||||||||||||| ||||| ||||||| ||||||||  |||||||| |||||||||||||||    
T  4563708 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactca 4563807  T
Q  249 attgcct 255  Q
    |||||||    
T  4563808 attgcct 4563814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 252
Target Start/End: Original strand, 4598162 - 4598271
Alignment:
Q  143 ttaagtttgatattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttc 242  Q
    |||||||||||  ||||| || ||||| ||||||||||||||||| ||||||||||| ||||| |||||| ||||||| ||||||||| ||||| |||||    
T  4598162 ttaagtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttc 4598261  T
Q  243 aactcaattg 252  Q
    || |||||||    
T  4598262 aaatcaattg 4598271  T

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Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 4570960 - 4571063
Alignment:
Q  140 cacttaagtttgatattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttc 239  Q
    |||||| || |||| || ||| ||||| || |||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||| ||||||||    
T  4570960 cacttaggtgtgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttc 4571059  T
Q  240 ttca 243  Q
    ||||    
T  4571060 ttca 4571063  T

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Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 255
Target Start/End: Original strand, 4592220 - 4592334
Alignment:
Q  141 acttaagtttgatattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttct 240  Q
    |||||| |||||| || ||| |||||||| ||||| |||| ||| ||||||||||| || ||||| |||||||||||||||| ||||||  |||||||||    
T  4592220 acttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttct 4592319  T
Q  241 tcaactcaattgcct 255  Q
    ||||||| |||||||    
T  4592320 tcaactcgattgcct 4592334  T

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Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 4480696 - 4480788
Alignment:
Q  155 ttgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactc 247  Q
    |||||| ||||| || |||||||||||||| |||||||||||||| ||||| || |||||||| |||||||||||  || |||||||||||||    
T  4480696 ttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactc 4480788  T

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Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 4504529 - 4504434
Alignment:
Q  152 atattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactc 247  Q
    ||||| ||| ||||| || |||||||||||||| |||||||||||||| ||||| || ||| |||| |||||||||||  ||||||||||||||||    
T  4504529 atattttttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactc 4504434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 4579201 - 4579280
Alignment:
Q  48 ctttcaaatcaatatctgcaacaagaaggcttacaagcaacatgaagtttatgaatataatattaatgtgatctttagtta 128  Q
    ||||||||||||| || | | ||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  4579201 ctttcaaatcaatctccgaagcaagaag-cttacaagcaatgagaagtttatgaatataatattaatgtgatctttagtta 4579280  T

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Target: chr6; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 247
Target Start/End: Original strand, 3171741 - 3171836
Alignment:
Q  152 atattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactc 247  Q
    ||||||||| ||||| || |||||||||||||| |||||||||||||| ||||| || |||  ||| || ||||||||  ||||||||||||||||    
T  3171741 atattgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactc 3171836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 4516324 - 4516413
Alignment:
Q  155 ttgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaa 244  Q
    ||||||||||| ||| |||||||||||||| ||||||||||  || ||||| || || ||||| |||||||||||  |||||||||||||    
T  4516324 ttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttcaa 4516413  T

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Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 4617025 - 4617117
Alignment:
Q  155 ttgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactc 247  Q
    |||||| |||||||| |||||||| ||||| | |||||||||||| ||||| || || ||||| |||| ||||||  ||||||||||||||||    
T  4617025 ttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactc 4617117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 4461126 - 4461212
Alignment:
Q  155 ttgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttctt 241  Q
    |||||| ||||| || |||||||| ||||| ||||||||| |||| |||   ||||||||||| || ||||||||||||||||||||    
T  4461126 ttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttctt 4461212  T

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Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 4469813 - 4469898
Alignment:
Q  162 agcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactc 247  Q
    ||||| || |||||||| ||||| ||||||||| |||| |||   ||||||||||| || |||||||||||||||||||| |||||    
T  4469813 agcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactc 4469898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 4490468 - 4490392
Alignment:
Q  171 tccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactc 247  Q
    |||||||||||||| |||||||||||||| ||||  || ||  |||||||||||||| |  ||||||||||||||||    
T  4490468 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactc 4490392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 4492958 - 4493050
Alignment:
Q  155 ttgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactc 247  Q
    |||||| ||||| || ||||| |||||||| |||||||||||||| ||||| || ||||||   |||||||||||  ||||||| ||||||||    
T  4492958 ttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttctttttcaactc 4493050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 4607041 - 4606945
Alignment:
Q  134 aaaagccacttaagtttgatattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctcc 230  Q
    ||||| |||||| ||||||| |||||| ||||| || | |||||||||||| |||||||||||||| ||| | || || |||||| ||||| |||||    
T  4607041 aaaagtcacttaggtttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtctcttgtccccctcc 4606945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 4505860 - 4505933
Alignment:
Q  155 ttgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcct 228  Q
    |||||| |||||||| |||||||| ||||| |||||||||||| | ||||| || |||||||| || |||||||    
T  4505860 ttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcct 4505933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 4392154 - 4392063
Alignment:
Q  156 tgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactc 247  Q
    ||||| ||||| || |||||||||| ||| |||||||||||| | ||| | || |||||||  ||||||||||   ||||||||||||||||    
T  4392154 tgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttcaactc 4392063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 4568072 - 4568143
Alignment:
Q  171 tccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttc 242  Q
    |||||||||||||| |||||||||||||| ||| |  | |||||||| ||||||| |||  |||||||||||    
T  4568072 tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttc 4568143  T

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Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 4267297 - 4267203
Alignment:
Q  153 tattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactc 247  Q
    |||||||| ||||  || |||||||| ||||| |||||||||||||| ||| | || |||||||| |||| ||| ||  ||||| ||||||||||    
T  4267297 tattgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactc 4267203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 140 - 248
Target Start/End: Complemental strand, 20863987 - 20863879
Alignment:
Q  140 cacttaagtttgatattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttc 239  Q
    |||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||| || ||||  ||| | ||||| |||||||||||  ||||||||    
T  20863987 cacttaagtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttc 20863888  T
Q  240 ttcaactca 248  Q
    |||||||||    
T  20863887 ttcaactca 20863879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 1674229 - 1674318
Alignment:
Q  155 ttgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaa 244  Q
    |||||| ||||||||||||||||||||||| |||||||||||||| ||||| || || ||||| |||| ||||||  |||||||||||||    
T  1674229 ttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaa 1674318  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 236
Target Start/End: Complemental strand, 16686417 - 16686315
Alignment:
Q  134 aaaagccacttaagtttgatattgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccacc 233  Q
    ||||| |||||| ||||||| |||||| ||||| || ||| |||||||||| |||||||||||||| ||||| || |||||||||| ||| || ||||||    
T  16686417 aaaagtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctcgggtcttcgtccacc 16686318  T
Q  234 ttc 236  Q
    |||    
T  16686317 ttc 16686315  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 28000228 - 28000136
Alignment:
Q  155 ttgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactc 247  Q
    |||||| | ||||||||||||||||||||| |||||||||||||| ||||| || || ||||| |||| ||||||  |||| |||||||||||    
T  28000228 ttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactc 28000136  T

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Target: scaffold0477 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 4816 - 4723
Alignment:
Q  154 attgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactc 247  Q
    ||||||| ||||  || |||||||||||||| |||||||||||||| |||||||| ||||  || |||| ||||||  ||||||||||||||||    
T  4816 attgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactc 4723  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 1281117 - 1281206
Alignment:
Q  155 ttgtttgagcaacacttccttaatcactttctccaagttcatgtaagaacagcctccaggtctcgtgtcctcctccaccttcttcttcaa 244  Q
    |||||| ||||||| ||||||||||||||| || ||||||||||| ||||| || || ||||| |||| ||||||| ||  |||||||||    
T  1281117 ttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaa 1281206  T

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